EY679392

Overview
NameEY679392
Unique NameEY679392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length169
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679392 vs. ExPASy Swiss-Prot
Match: RECA_PSEFL (Protein recA OS=Pseudomonas fluorescens GN=recA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.040e-20
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLDNQIRDKLVDP 154
            LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPD+ ATL+ QIRDKL+ P
Sbjct:  279 LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIVATLEKQIRDKLLTP 329          
BLAST of EY679392 vs. ExPASy Swiss-Prot
Match: RECA_PSETO (Protein recA OS=Pseudomonas tolaasii GN=recA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.775e-20
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 2
Query:    2 LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLDNQIRDKLV 148
            LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPD+AATL+ QIRDKL+
Sbjct:  279 LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEKQIRDKLL 327          
BLAST of EY679392 vs. ExPASy Swiss-Prot
Match: RECA_PSEFS (Protein recA OS=Pseudomonas fluorescens (strain SBW25) GN=recA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.775e-20
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 2
Query:    2 LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLDNQIRDKLV 148
            LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPD+AATL+ QIRDKL+
Sbjct:  279 LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEKQIRDKLL 327          
BLAST of EY679392 vs. ExPASy Swiss-Prot
Match: RECA_PSEPF (Protein recA OS=Pseudomonas fluorescens (strain Pf0-1) GN=recA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.709e-19
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 2
Query:    2 LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLDNQIRDKLVDP 154
            LHGFVEKSGAWYAY G+KIGQGKANSAKFLADNP+VAA L+ Q+RDKL+ P
Sbjct:  279 LHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEVAAKLEKQLRDKLLSP 329          
BLAST of EY679392 vs. ExPASy Swiss-Prot
Match: RECA_PSEU2 (Protein recA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=recA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.738e-19
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLDNQIRDKLVDPG 157
            LHGFVEKSGAWY+Y GSKIGQGKANSAKFLADNP++   L+ QIRDKL+ PG
Sbjct:  279 LHGFVEKSGAWYSYQGSKIGQGKANSAKFLADNPEICKALEKQIRDKLLTPG 330          
BLAST of EY679392 vs. ExPASy Swiss-Prot
Match: RECA_PSESM (Protein recA OS=Pseudomonas syringae pv. tomato GN=recA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.738e-19
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLDNQIRDKLVDPG 157
            LHGFVEKSGAWY+Y GSKIGQGKANSAKFLADNP++   L+ QIRDKL+ PG
Sbjct:  279 LHGFVEKSGAWYSYQGSKIGQGKANSAKFLADNPEICKALEKQIRDKLLTPG 330          
BLAST of EY679392 vs. ExPASy Swiss-Prot
Match: RECA_PSE14 (Protein recA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=recA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.738e-19
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLDNQIRDKLVDPG 157
            LHGFVEKSGAWY+Y GSKIGQGKANSAKFLADNP++   L+ QIRDKL+ PG
Sbjct:  279 LHGFVEKSGAWYSYQGSKIGQGKANSAKFLADNPEICKALEKQIRDKLLTPG 330          
BLAST of EY679392 vs. ExPASy Swiss-Prot
Match: RECA_PSEF5 (Protein recA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=recA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.719e-15
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 2
Query:    2 LHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLDNQIRDKLV 148
            LHGF+EKSGAWY+Y G+KIGQGKANSAKFL DNP++   L+ QIR+KL+
Sbjct:  279 LHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEKQIREKLL 327          
BLAST of EY679392 vs. ExPASy Swiss-Prot
Match: RECA_PSEPU (Protein recA OS=Pseudomonas putida GN=recA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.482e-14
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:    8 GFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLDNQIRDKLVDPG 157
            G VEKSGAWYAY G+KIGQGKAN+AK+LA+NP + A ++ QIRDKL+  G
Sbjct:  281 GLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEKQIRDKLLTSG 330          
BLAST of EY679392 vs. ExPASy Swiss-Prot
Match: RECA_VIBCH (Protein recA OS=Vibrio cholerae GN=recA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.222e-14
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:    5 HGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLDNQIRDKLVDP 154
            H  VEKSGAWY+YNG KIGQGKAN+ K+L +NP++A TLD ++R+ L++P
Sbjct:  280 HKMVEKSGAWYSYNGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNP 329          
The following BLAST results are available for this feature:
BLAST of EY679392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RECA_PSEFL1.040e-2088.24Protein recA OS=Pseudomonas fluorescens GN=recA PE... [more]
RECA_PSETO1.775e-2091.84Protein recA OS=Pseudomonas tolaasii GN=recA PE=3 ... [more]
RECA_PSEFS1.775e-2091.84Protein recA OS=Pseudomonas fluorescens (strain SB... [more]
RECA_PSEPF5.709e-1982.35Protein recA OS=Pseudomonas fluorescens (strain Pf... [more]
RECA_PSEU29.738e-1978.85Protein recA OS=Pseudomonas syringae pv. syringae ... [more]
RECA_PSESM9.738e-1978.85Protein recA OS=Pseudomonas syringae pv. tomato GN... [more]
RECA_PSE149.738e-1978.85Protein recA OS=Pseudomonas syringae pv. phaseolic... [more]
RECA_PSEF51.719e-1571.43Protein recA OS=Pseudomonas fluorescens (strain Pf... [more]
RECA_PSEPU2.482e-1468.00Protein recA OS=Pseudomonas putida GN=recA PE=3 SV... [more]
RECA_VIBCH7.222e-1462.00Protein recA OS=Vibrio cholerae GN=recA PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-F10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679392 ID=EY679392; Name=EY679392; organism=Citrus sinensis; type=EST; length=169bp
GCTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACGGCA
GCAAGATCGGCCAGGGCAAGGCCAACTCGGCCAAGTTCCTTGCGGATAAC
CCGGATGTTGCCGCTACGCTCGATAATCAGATCCGCGACAAGCTTGTTGA
CCCCGGCACCTGGAGTTCA
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