EY679386

Overview
NameEY679386
Unique NameEY679386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length952
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679386 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 2.039e-38
Identity = 77/117 (65.81%), Postives = 91/117 (77.78%), Query Frame = 3 
Query:   12 ETCTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSF----KSNIEQVERNGIHGSSLHYFKIDAINWQSDIEKCLTWEA 350
            E CTLPQLELLEATARAIQP+L WG SGLA+ DGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRD ++ SS        +   E+NG++  S  +F   +I+W++DI+ CL WEA
Sbjct: 1029 EACTLPQLELLEATARAIQPVLAWGPSGLAVVDGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEA 1145
[Close]
BLAST of EY679386 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 6.788e-34
Identity = 70/115 (60.87%), Postives = 84/115 (73.04%), Query Frame = 3 
Query:   12 ETCTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSN--IEQVERNGIHGSSLHYFKIDAINWQSDIEKCLTWEA 350
            E CTLPQLELLE TARA+  I+ WG SG+++ADGLSNLLKCRL  TIRCLSHPSAHVRALS SVLRD L++    S+  I+   RNGI   +        INWQ+D+E+C+ WEA
Sbjct: 1020 EACTLPQLELLEVTARAVHLIVEWGDSGVSVADGLSNLLKCRLSTTIRCLSHPSAHVRALSMSVLRDILNSGQINSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEA 1134
The following BLAST results are available for this feature:
BLAST of EY679386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH2.039e-3865.81Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ6.788e-3460.87Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-F04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679386 ID=EY679386; Name=EY679386; organism=Citrus sinensis; type=EST; length=952bp
CCACGCGTCCGGAAACTTGCACACTGCCACAACTTGAGTTACTGGAAGCA
ACAGCTAGAGCAATTCAGCCCATCCTGCGGTGGGGAAAGTCTGGATTAGC
AATTGCAGATGGTCTTTCAAACCTTTTAAAGTGTCGTCTACCTGCAACGA
TCCGATGCCTTTCTCATCCAAGTGCCCATGTCCGTGCACTGAGCACTTCA
GTTCTTCGTGACTTTTTACATACCAGTTCGTTCAAATCAAATATTGAGCA
AGTAGAGAGAAATGGCATCCATGGGTCTTCGTTACACTACTTCAAAATTG
ATGCAATTAACTGGCAATCTGACATCGAAAAATGCTTAACTTGGGAAGCC
CCATAGCCGACTTGCAACAAGAATGCCAATTCTATTTCTTGATATCGCTG
CCCAAGGAATTTAGTTGTATCATATCCTTTTGAAAATAAAATAACCTACA
TCAATCTTTAGAGGTTTGTGATTTATATTTAATTTTTCCAAGCGAGAATA
ATGGATGGTAATAACCCCGATCCATTGGCTTTGAAAGAAAAAAGCAATTA
CTTAACCCAACAGAAAAGAATTCATAACTTAAATATCGAGGTGGGTTACA
CCAATAAAAACACAAATACAAAAAACTTGAATTTTAATAATATTAAATAT
TTTTTAGAGTAGACACATAGAATAATATCAAAGCACCTATTTTATAAAAA
CAATAGTAACAAAAAAAAAAATATCACAATATATAATAATATAAATTATA
TATAAAATTACACCTTGTAAAACGAGAGGGAAAAAATAGAGAAATAAGAG
AACTTTATACATCTATTGTCTTATTATAGTAGTATTAAATTGAAAAATAG
TACACGTATCCAATATCATTCATCAATCAAACAATCTTATATGTAAATTA
TATAGAAAATCTTTTAATACATACATATTATATTAAAAAATATACACACA
TA
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