EY679032

Overview
NameEY679032
Unique NameEY679032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679032 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 3.035e-81
Identity = 131/179 (73.18%), Postives = 152/179 (84.92%), Query Frame = 1
Query:    4 MGAGGRMAVPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEIFVPKQKTAIGWNAKYLTNPIGRI 540
            MGAGGRM VP++  K ++D  KRVPC KPPF++  +KKAIPPHCF+RS+ RSFSY++ D+ IA  FYY+A  Y   LP PLSYLAWP+YWA QGC+LTG+WV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSNTGSL+RDE+FVPKQK+AI W  KYL NP+GRI
Sbjct:    1 MGAGGRMPVPTSSKKSETDTTKRVPCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYLISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRI 179          
BLAST of EY679032 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 9.762e-80
Identity = 129/178 (72.47%), Postives = 151/178 (84.83%), Query Frame = 1
Query:    4 MGAGGRMAVPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEIFVPKQKTAIGWNAKYLTNPIGR 537
            MGAGGRM V  +P K ++D LKRVPC  PPFT+ ++KKAIPPHCF+RS+ RSFSY++ D+ +A  FYY+A TY   LPHPLSY+AWP+YWA QG +LTGVWV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSNTGSL+RDE+FVPK+K+ I W  KYL NP+GR
Sbjct:    1 MGAGGRMQVSPSPKKSETDTLKRVPCETPPFTVGELKKAIPPHCFKRSIPRSFSYLIWDIIVASCFYYVATTYFPLLPHPLSYVAWPLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSDIKWYGKYLNNPLGR 178          
BLAST of EY679032 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.079e-78
Identity = 135/181 (74.59%), Postives = 150/181 (82.87%), Query Frame = 1
Query:    4 MGAGGRMAVPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEIFVPKQKTAIGWNAKYLTNPIGRIQT 546
            MGAGGR  VP    K + DPLKRVP  KP F+LSQ+KKAIPPHCF+RSVLRSFSYVV+DLTIAF  YY+A  Y H LP PLS+    +YWA+QGCILTGVWV+AHECGHHAFSDYQ LDD VGLILHS LLVPYFSWKYSHRRHHSNTGSL+RDE+FVPKQK+ I W +KYL NP GR+ T
Sbjct:    1 MGAGGRTDVPPANRKSEVDPLKRVPFEKPQFSLSQIKKAIPPHCFQRSVLRSFSYVVYDLTIAFCLYYVATHYFHLLPGPLSFRGMAIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSCIKWYSKYLNNPPGRVLT 181          
BLAST of EY679032 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 3.972e-73
Identity = 125/179 (69.83%), Postives = 144/179 (80.45%), Query Frame = 1
Query:    1 TMGAGGRMAVPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEIFVPKQKTAIGWNAKYLTNPIGR 537
            TMG  GR+A      K    PL RVP +KPPFT+ Q+KKAIPPHCF+RS+L SFSYVV+DL+ AF+FY IA TY H LP P S +AWP+YW LQGC+LTGVWV+AHECGHHAFS YQW+DD VGL LHS LLVPYFSWK SHRRHHSNTGSLDRDE+FVPK K+ + W +KYL NP+GR
Sbjct:    8 TMGGRGRVAKVEVQGK---KPLSRVPNTKPPFTVGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFY-IATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGR 182          
BLAST of EY679032 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 9.179e-62
Identity = 106/179 (59.22%), Postives = 132/179 (73.74%), Query Frame = 1
Query:    4 MGAGGRMAVPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEIFVPKQKTAIGWNAKYLTNPIGRI 540
            MG GGR      P+      ++RV    PPFT+S +K+AIPPHCF+RSV+RS  Y+VHD  IA++FY++AD YI  LP PL+YLAWP+YW  Q  ILTG+WV+ HECGHHAFSDYQW+DDTVG ILHS L+ PYFSWKYSHR HH+NT SLD DE+++PK K  +    K L +P GR+
Sbjct:    1 MGGGGRGRTSQKPL------MERVSVD-PPFTVSDLKQAIPPHCFKRSVIRSSYYIVHDAIIAYIFYFLADKYIPILPAPLAYLAWPLYWFCQASILTGLWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHANTNSLDNDEVYIPKSKAKVALYYKVLNHPPGRL 172          
BLAST of EY679032 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.177e-38
Identity = 71/139 (51.08%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   88 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEIFVPKQKTAIG 501
            P FT+ ++++ IP HCFERS LR   +V  DLT A + + +A T I +  +PL  YLAWP YW +QG + TG+WV+AHECGH +FS  + L++TVG ILHS LLVPY SW+ SH +HH  TG + +D++FVPK ++ +G
Sbjct:   36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLF-LAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVG 173          
BLAST of EY679032 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 3.177e-38
Identity = 71/139 (51.08%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   88 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEIFVPKQKTAIG 501
            P FT+ ++++ IP HCFERS LR   +V  DLT A + + +A T I +  +PL  YLAWP YW +QG + TG+WV+AHECGH +FS  + L++TVG ILHS LLVPY SW+ SH +HH  TG + +D++FVPK ++ +G
Sbjct:   36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLF-LAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVG 173          
BLAST of EY679032 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.438e-30
Identity = 63/151 (41.72%), Postives = 94/151 (62.25%), Query Frame = 1
Query:   76 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEIFVP---KQKTAIGWNAKYL 519
            P + PPF L++++  IP HC+ +  LRS SYVV D+        IA        H  S+L +P+YWA+QG +   ++V+ H+CGH +FSD Q L++ VG ILHS +LVPY  W+ SH+ HH N G+++ DE +VP   K    +G++ K+L
Sbjct:   24 PSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAI-------HLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPMPEKLYNKVGYSTKFL 167          
BLAST of EY679032 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.438e-30
Identity = 62/135 (45.93%), Postives = 85/135 (62.96%), Query Frame = 1
Query:   76 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEIFVP 480
            P ++PPF +  ++ AIP HC+ +S LRS SYVV D+ IA     IA  Y+       S+  WP+YWA QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SHR HH N G ++ DE +VP
Sbjct:   28 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDI-IAVAALAIAAVYVD------SWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVP 155          
BLAST of EY679032 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.980e-28
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 1
Query:   76 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEIFVP 480
            P ++PPF +  ++ AIP HC+ +S LRS SYV  D+  A     +A  Y        S+  WP+YW  QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SHR HH N G ++ DE +VP
Sbjct:   25 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDI-FAVAALAMAAVYFD------SWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVP 152          
The following BLAST results are available for this feature:
BLAST of EY679032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD6E_ARATH3.035e-8173.18Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU9.762e-8072.47Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E2_SOYBN1.079e-7874.59Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN3.972e-7369.83Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL9.179e-6259.22Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORIS3.177e-3851.08Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP3.177e-3851.08Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD3E_TOBAC2.438e-3041.72Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH2.438e-3045.93Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA2.980e-2842.96Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-054-C08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679032 ID=EY679032; Name=EY679032; organism=Citrus sinensis; type=EST; length=893bp
ACAATGGGTGCAGGTGGACGAATGGCTGTACCTTCAACGCCCATGAAGGT
GGATTCTGATCCCTTGAAGCGAGTTCCATGCTCAAAGCCACCATTCACAC
TCAGCCAAGTAAAGAAAGCTATCCCACCTCACTGTTTTGAGCGGTCTGTT
CTCCGTTCATTCTCCTACGTTGTTCATGACCTCACCATTGCCTTTGTCTT
TTACTACATTGCCGACACTTACATTCACCAACTTCCTCACCCTCTCTCTT
ATCTGGCCTGGCCAGTTTACTGGGCTCTTCAAGGCTGCATTTTAACTGGA
GTTTGGGTTGTAGCTCATGAATGTGGCCACCATGCCTTCAGTGACTATCA
ATGGCTTGACGACACTGTTGGCCTTATCCTCCACTCTTGCCTCCTTGTCC
CCTACTTCTCTTGGAAGTATAGCCATCGCCGCCATCACTCCAATACAGGA
TCCCTTGATCGTGATGAAATATTTGTCCCCAAGCAAAAAACCGCCATTGG
TTGGAATGCCAAGTACCTTACAAACCCAATTGGCCGAATCCAAACACTTA
ATGGCACCCTCACCCTTTGGCTGGGCCTTTGTAACTGGGCATTCAATGAA
TCCCGGAAGGGCCTTTAATGAAAAAATTTGCTTGCCACTTTTAAATCTTT
AAGGGCCCCTTCTAACTCAAAACCGGGAGAAGGCTTCTAAAATTTTCTTT
TCTGAAATGCTGGAATTTTTAAGCTTTTGAATTATAAAGTTCCTAACGGG
CTTTGGTAACACGAAAAAAAAAACTTGGGGAGATGAGTTACTGCTTATTA
TAGAAGGAAACTTTTACTGGGAAGAGGAAAAGGAATTCTCCGTATATTTA
ATCAAAATTGGGAGTAGGCAAACACAGAATCTTTAAGAGGAGA
back to top