EY664170

Overview
NameEY664170
Unique NameEY664170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664170 vs. ExPASy Swiss-Prot
Match: CRYD_ORYSJ (Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CRYD PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.011e-69
Identity = 87/129 (67.44%), Postives = 106/129 (82.17%), Query Frame = 3
Query:    3 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVL--SSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKA 383
            +FGFPKTGALRAQFLIECL DL++NL  +GL+LLIRHGKPE+I+PS+AK+  AH VYA KETCSEEL VE LVRK L+QVV+     SN K   +P+L+LIWG T+YH+DD+PF  ++LPDVYT FRKA
Sbjct:  129 YFGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFRKA 257          

HSP 2 Score: 80.1073 bits (196), Expect = 3.011e-69
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 3
Query:  654 TLALLLIQXXKGMXFVGGESAXLGXVNEYFWKKDLXKVYKETRNEMLGPDYST 812
            +L L + +  KGM FVGGESA LG V+EYFWKKD  KVYKETRN MLGPDYST
Sbjct:  296 SLGLSMTKAEKGMHFVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYST 348          

HSP 3 Score: 42.743 bits (99), Expect = 3.011e-69
Identity = 19/48 (39.58%), Postives = 29/48 (60.42%), Query Frame = 2
Query:  458 QSIEAKCTVRGCIRIPSSFGPPP-----SVVDWGSVPLIEQLELHSPK 586
            +++E+K +VR C ++P S GPPP      +  WG+VP +E L L   K
Sbjct:  256 KAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTK 303          
BLAST of EY664170 vs. ExPASy Swiss-Prot
Match: CRYD_ARATH (Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CRYD PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.216e-66
Identity = 83/126 (65.87%), Postives = 96/126 (76.19%), Query Frame = 3
Query:    6 FGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKA 383
            F FPKTGALR  FL+ECL DLRKNLM RGLNLLIR GKPEEI+PSLAK FGA  V+A KETCSEE++VERLV + L++V           N  +L+LIWG+TMYH DD+PFD   LPDVYT FRK+
Sbjct:  129 FNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRV----------GNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKS 244          

HSP 2 Score: 77.0258 bits (188), Expect = 2.216e-66
Identity = 39/56 (69.64%), Postives = 41/56 (73.21%), Query Frame = 3
Query:  684 KGMXFVGGESAXLGXVNEYFWKKDLXKVYKETRNEMLGPDYSTNL-XMACFRSISP 848
            +GM FVGGESA +G V EYFWKKDL KVYKETRN MLGPDYST       F  ISP
Sbjct:  288 RGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISP 343          

HSP 3 Score: 52.7582 bits (125), Expect = 2.216e-66
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 2
Query:  458 QSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQL 568
            +S+EAKC++R   RIP S GP PSV DWG VP +E+L
Sbjct:  243 KSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKL 279          
BLAST of EY664170 vs. ExPASy Swiss-Prot
Match: CRYD_SOLLC (Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 5.289e-53
Identity = 84/131 (64.12%), Postives = 108/131 (82.44%), Query Frame = 3
Query:    3 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQ---SNDK-STNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKA 383
            +FG PKTGALRAQF+IECL DL++NL+ RGL+LLI+HGKPE+I+PSLAK++ AH VYA KETCSEE+ VE++V +NLQ++V  S     ND  S N  +L+L+WG+TMYH+DD+PFD  SLPDVYT FRK+
Sbjct:  122 YFGMPKTGALRAQFIIECLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQKLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKS 252          

HSP 2 Score: 53.9138 bits (128), Expect = 5.289e-53
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 2
Query:  458 QSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKGS 592
            +S+E K  VR C ++P+SFGPPP V DWG VP + +L L   K S
Sbjct:  251 KSVEYKSKVRNCTKLPTSFGPPPEVGDWGHVPQVSELGLQQEKVS 295          

HSP 3 Score: 76.6406 bits (187), Expect = 1.948e-13
Identity = 38/54 (70.37%), Postives = 41/54 (75.93%), Query Frame = 3
Query:  651 STLALLLIQXXKGMXFVGGESAXLGXVNEYFWKKDLXKVYKETRNEMLGPDYST 812
            S L L   +  KGM FVGGESA LG V++YFWKKDL KVYKETRN MLG DYST
Sbjct:  285 SELGLQQEKVSKGMNFVGGESAALGRVHDYFWKKDLLKVYKETRNGMLGADYST 338          
BLAST of EY664170 vs. ExPASy Swiss-Prot
Match: CRYD_DANRE (Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.990e-29
Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 3
Query:    3 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKA 383
            H+ FPKTG  R +FL++ + DLR  L   G  LL+R GKPE+++  L K  G+ +  A  +E  SEE +VE  +++   Q            N  +++  WG+T+YH DD+PF H   LPDVYT FRKA
Sbjct:   49 HYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKEICCQ------------NKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKA 165          

HSP 2 Score: 43.1282 bits (100), Expect = 7.990e-29
Identity = 18/37 (48.65%), Postives = 23/37 (62.16%), Query Frame = 3
Query:  702 GGESAXLGXVNEYFWKKDLXKVYKETRNEMLGPDYST 812
            GGE+  L  +  YFW  +    YKETRN M+G D+ST
Sbjct:  217 GGETEALARLKHYFWDTNAVATYKETRNGMIGVDFST 253          

HSP 3 Score: 26.1794 bits (56), Expect = 7.990e-29
Identity = 12/42 (28.57%), Postives = 21/42 (50.00%), Query Frame = 2
Query:  458 QSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSP 583
            +++EA+  VR  +  P     PPS ++ G +P  + L    P
Sbjct:  164 KAVEAQGRVRPVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEP 205          
BLAST of EY664170 vs. ExPASy Swiss-Prot
Match: PHR2_ARATH (Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.678e-22
Identity = 53/123 (43.09%), Postives = 73/123 (59.35%), Query Frame = 3
Query:    9 GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 377
            GF KTG  RAQFLIE +++LRKNL  RG NL++R GKPE ++  LAK  GA AVYA +E   +E+  E  +   +++               ++K  WG+T+YHLDD+PF    LP  Y  F+
Sbjct:  160 GFDKTGPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKE------------EGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFK 270          
BLAST of EY664170 vs. ExPASy Swiss-Prot
Match: CRYD_XENLA (Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.678e-22
Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 3
Query:    3 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG-AHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKA 383
            +F FPKTG  R +FL+E + DLR  L  +G NLL+R GKPEE+I  L K  G   AV   +E   EE +VE  V++   ++ +  Q+             WG+T+YH +D+PF H SSLPDVYT FRKA
Sbjct:   50 YFNFPKTGPHRLKFLLESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQACTRLGIKYQT------------FWGSTLYHREDLPFRHISSLPDVYTQFRKA 166          
BLAST of EY664170 vs. ExPASy Swiss-Prot
Match: CRYD_GLOVI (Cryptochrome DASH OS=Gloeobacter violaceus GN=cry PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.786e-20
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 3
Query:    6 FGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK 380
            FGF KTG  RA+FL+E +ADLR++L   G +LL+R G PEE+IP+L       AV+   E  SEEL VER ++  L  +           N P ++  WGTT+ H DD+PF   ++P+++T FRK
Sbjct:   48 FGFEKTGPFRARFLLESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQAALAPL-----------NVP-VRSFWGTTLVHPDDLPFAIEAIPELFTDFRK 160          
BLAST of EY664170 vs. ExPASy Swiss-Prot
Match: CRYD_SYNY3 (Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803) GN=cry PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.468e-17
Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = 3
Query:    3 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK 380
            H GF KTG  R+ FL + + +L ++L   G  LL+  G PE++IP +AK   A  +Y  +E   EEL+VER + K L  + +            + K  WG+T+ H +D+PF    LPD++T FRK
Sbjct:   49 HQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGI------------EAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRK 162          
BLAST of EY664170 vs. ExPASy Swiss-Prot
Match: CRYD_NATPD (Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=cry PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.761e-14
Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = 3
Query:    6 FGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK 380
            +G PKTG  RA F  + +ADLR +L +RG +LL+R G+P  ++P LA+  GA AVYAQ +  +EE      V   L    ++            L+  W  T+YH DD+P   + + D +T +RK
Sbjct:   46 YGPPKTGGHRAVFRRQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASALDDAGIA------------LRQRWTHTLYHPDDLPTPPTDIDDTFTPWRK 158          
BLAST of EY664170 vs. ExPASy Swiss-Prot
Match: CRYD_OSTTA (Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus tauri GN=Ot01g06320 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.339e-13
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 3
Query:    9 GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH---AVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSS----LPDVYTHFR 377
            G  + GA R +F +EC+ DL+ +L   G +LL+R GK  ++I  L  + GA+    +  Q E  SEE  ++  V +  ++      ++     H      WG+T+YH+DD+PFD +S    LPDV+T FR
Sbjct:   54 GLARFGAGRGKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLT-GANDRTIILTQTEVTSEETEMDVAVERATRERARGGAASATMERH------WGSTLYHIDDVPFDVTSGLSDLPDVFTPFR 176          
The following BLAST results are available for this feature:
BLAST of EY664170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CRYD_ORYSJ3.011e-6967.44Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_ARATH2.216e-6665.87Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_SOLLC5.289e-5364.12Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_DANRE7.990e-2941.09Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 ... [more]
PHR2_ARATH6.678e-2243.09Blue-light photoreceptor PHR2 OS=Arabidopsis thali... [more]
CRYD_XENLA6.678e-2244.96Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE... [more]
CRYD_GLOVI4.786e-2043.20Cryptochrome DASH OS=Gloeobacter violaceus GN=cry ... [more]
CRYD_SYNY36.468e-1737.30Cryptochrome DASH OS=Synechocystis sp. (strain PCC... [more]
CRYD_NATPD1.761e-1436.80Cryptochrome DASH OS=Natronomonas pharaonis (strai... [more]
CRYD_OSTTA4.339e-1334.62Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664170 ID=EY664170; Name=EY664170; organism=Citrus sinensis; type=EST; length=860bp
ACCATTTTGGTTTCCCTAAAACTGGAGCACTCAGGGCACAGTTTCTCATA
GAATGTTTGGCTGACCTAAGAAAGAATTTGATGAATCGAGGCCTAAACCT
GCTCATTCGACATGGGAAGCCGGAGGAAATTATCCCTTCTCTTGCAAAAT
CGTTTGGAGCTCATGCAGTATATGCCCAAAAGGAGACTTGCAGTGAGGAG
CTGAATGTGGAAAGATTGGTCAGAAAAAATCTGCAGCAAGTTGTGTTATC
ATCTCAATCTAATGACAAATCCACAAACCACCCTCAGTTAAAATTGATTT
GGGGAACTACAATGTATCATTTAGATGACATTCCATTCGATCACAGTAGT
CTTCCTGATGTCTACACTCACTTTCGCAAGGCAAGTTTTGTGGTTACTGA
TATCATGTGCATGGACAAACAGGAAAATGCATTTTCTGTTGATGAAACCC
TATTTTGCAGTCTATTGAAGCTAAGTGCACAGTCCGAGGCTGCATTAGAA
TTCCTTCATCTTTTGGACCTCCACCTAGCGTTGTCGATTGGGGTTCCGTT
CCTTTGATCGAGCAGCTTGAACTTCATTCACCGAAGGGCAGTTTACATGG
AACCCAAATTCTAATTTATGATGCTTTCAGAAGAATCAAGAATGTTTTAG
TCGACACTTGCTTTGCTGTTGATACAGGNTANTAAAGGAATGCNGTTCGT
GGGGGGTGAAAGTGCANCTCTGGGCANAGTGAATGAGTATTTCTGGAAGA
AGGACCTNNCTAAGGTTTATAAAGAGACAAGGAATGAGATGTTAGGACCT
GATTACTCAACAAATCTCTNCATGGCTTGCTTCAGGAGCATTTCTCCCGT
ACATTATGAA
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