EY664145

Overview
NameEY664145
Unique NameEY664145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.930e-40
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 1
Query:  337 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 594
            D EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct:  195 DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.639e-24
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1
Query:  346 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct:  158 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 225          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.639e-24
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1
Query:  346 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct:  186 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.976e-24
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  328 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            P  ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  193 PLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.976e-24
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  328 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            P  + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  182 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.976e-24
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  328 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            P  + ED L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.976e-24
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 1
Query:  346 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP ANN
Sbjct:  185 DPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANN 252          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.976e-24
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  328 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            P  + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  182 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.303e-23
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  328 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            P  ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL+DP ANN
Sbjct:  183 PLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 256          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.303e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 1
Query:  328 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            P  ++ D ++PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  189 PLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262          
The following BLAST results are available for this feature:
BLAST of EY664145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB26_ARATH9.930e-4091.86Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB25_SOLLC7.639e-2473.53Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC7.639e-2473.53Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB2A_PINSY9.976e-2470.27Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_ARATH9.976e-2470.27Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SINAL9.976e-2471.62Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_LEMGI9.976e-2475.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_ARATH9.976e-2470.27Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2_PHYPA1.303e-2370.27Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_PINSY1.303e-2368.92Chlorophyll a-b binding protein type 2 member 1B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-D03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664145 ID=EY664145; Name=EY664145; organism=Citrus sinensis; type=EST; length=896bp
TACCGCATTACCATTACTAGTCAAAAGCATATTCTAAAGTTAAAAGTGTA
GCGAATTTGATAATTATAGTCATCATATATCATTTAGTTAAGCAAACACA
AATAGTCAGTTAGTTGCGTGCAAGGACTACATTCAATCTGCTTCCTTTCA
AGCAAAGTGCAAAGTTCAAATTCAATTAAACGTTAAAAAATTACAAAAAA
CTTTAGAGGTGAAATTTCAGAGTCTTTGAAAAGCTTGGGGATGAGTTTTG
AGTTCCATTCGATATGTTCTGGTAGATACATGCATGCATGGTTACCGAAA
CAAAAAAACTCAAACTCTGTGCAATTTCCATCGTAGGATTTGGAGGACAA
GCTTCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATCCTG
ACCAATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAGACTTGCA
ATGTTTGCCATGCTTGGTTTCTTTCTCCAAGCTTATGTCACAGGTGAAGG
TCCAGTTGAGAACCTTGCTAAACATCTCAGTGATCCTTTTGCCAACAACT
TGCTTACCGTGATCTCCGGAAACGCAGAGAGAGCTCCCACCCTGTGATTT
CAGTTGTTCTGGTGTTCTTTTCACTCGAATCTAAAATGCATTGTACATCT
CATCATCAAGACATTTCCAAGATGTTGAAAACCTAAATGATCATGGCACT
CGAATCCCCTACTCTCTGAGTATAGAGCTNGAGTGGTATTCACCTATAAC
CTCTNCTGTATATCATTTAAGCTAAATTGATNCTTGTCTATGATGCAAGA
CACGTAAGGGGGTAACCAAGTTGGTTGGTGTGGAGTGATTCGCACTCTAC
TCCTAAGAGAGGTCAGAGTTTAGTCCGCTCTCGTTGGATCACACTT
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