EY664142

Overview
NameEY664142
Unique NameEY664142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664142 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 9.397e-107
Identity = 187/214 (87.38%), Postives = 192/214 (89.72%), Query Frame = 3
Query:   45 PIPPKSLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFGPGK 686
            P  PK LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNF PGK
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          

HSP 2 Score: 23.0978 bits (48), Expect = 9.397e-107
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 1
Query:   10 TPRPSVRDIWYGPYRP 57
            T + + + IWYGP RP
Sbjct:   38 TVKSAPQSIWYGPDRP 53          
BLAST of EY664142 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 9.397e-107
Identity = 187/214 (87.38%), Postives = 192/214 (89.72%), Query Frame = 3
Query:   45 PIPPKSLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFGPGK 686
            P  PK LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNF PGK
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          

HSP 2 Score: 23.0978 bits (48), Expect = 9.397e-107
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 1
Query:   10 TPRPSVRDIWYGPYRP 57
            T + + + IWYGP RP
Sbjct:   38 TVKSAPQSIWYGPDRP 53          
BLAST of EY664142 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 383.645 bits (984), Expect = 7.891e-106
Identity = 185/214 (86.45%), Postives = 191/214 (89.25%), Query Frame = 3
Query:   45 PIPPKSLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFGPGK 686
            P  PK LGPFS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR+                AFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNF PGK
Sbjct:   52 PDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          

HSP 2 Score: 22.3274 bits (46), Expect = 7.891e-106
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 1
Query:   10 TPRPSVRDIWYGPYRP 57
            T + +   IWYGP RP
Sbjct:   40 TVKSAPTSIWYGPDRP 55          
BLAST of EY664142 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 1.145e-104
Identity = 183/211 (86.73%), Postives = 189/211 (89.57%), Query Frame = 3
Query:   54 PKSLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFGPGK 686
            PK LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHI DPVANNAWAYATNF PGK
Sbjct:   55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of EY664142 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 3.332e-104
Identity = 182/211 (86.26%), Postives = 189/211 (89.57%), Query Frame = 3
Query:   54 PKSLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFGPGK 686
            PK LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWA+ATNF PGK
Sbjct:   55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of EY664142 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 7.423e-104
Identity = 180/211 (85.31%), Postives = 189/211 (89.57%), Query Frame = 3
Query:   54 PKSLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFGPGK 686
            PK LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILA+WA QVVLMG +EGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNF PGK
Sbjct:   55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of EY664142 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 1.266e-103
Identity = 183/211 (86.73%), Postives = 188/211 (89.10%), Query Frame = 3
Query:   54 PKSLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFGPGK 686
            PK LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWAYATNF PGK
Sbjct:   27 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of EY664142 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.612e-103
Identity = 180/214 (84.11%), Postives = 189/214 (88.32%), Query Frame = 3
Query:   45 PIPPKSLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFGPGK 686
            P  PK LGPFSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L KNGVKFGEAVWFKAG+QIF+EGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+NLYDH+ADPVANNAWA+ATNF PG+
Sbjct:   52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          

HSP 2 Score: 22.7126 bits (47), Expect = 1.612e-103
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 1
Query:   10 TPRPSVRDIWYGPYRP 57
            T + +   IWYGP RP
Sbjct:   40 TVKSAPESIWYGPDRP 55          
BLAST of EY664142 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 2.160e-103
Identity = 180/211 (85.31%), Postives = 189/211 (89.57%), Query Frame = 3
Query:   54 PKSLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFGPGK 686
            PK LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+LSKNGV+FGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMG +EGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWA+ATNF PGK
Sbjct:   54 PKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of EY664142 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 1.353e-102
Identity = 178/214 (83.18%), Postives = 187/214 (87.38%), Query Frame = 3
Query:   45 PIPPKSLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFGPGK 686
            P  PK LGPFSE TPSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNG+KFGEAVWFKAGAQIFSEGGLDY GNPNLIHAQSILAIWACQVVLMG +EGYR+                AFDPLGLADDP+  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNF PGK
Sbjct:   53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          

HSP 2 Score: 23.8682 bits (50), Expect = 1.353e-102
Identity = 9/16 (56.25%), Postives = 10/16 (62.50%), Query Frame = 1
Query:   10 TPRPSVRDIWYGPYRP 57
            T R +   IWYGP RP
Sbjct:   41 TVRSAPESIWYGPDRP 56          
The following BLAST results are available for this feature:
BLAST of EY664142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB23_ORYSJ9.397e-10787.38Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI9.397e-10787.38Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI7.891e-10686.45Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB24_SOLLC1.145e-10486.73Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB26_PETSP3.332e-10486.26Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC7.423e-10485.31Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB25_SOLLC1.266e-10386.73Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB215_PEA1.612e-10384.11Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_LEMGI2.160e-10385.31Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PINTH1.353e-10283.18Chlorophyll a-b binding protein type I, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-C12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664142 ID=EY664142; Name=EY664142; organism=Citrus sinensis; type=EST; length=895bp
CNCGNATTAACACCTCGACCCAGCGTCCGCGACATATGGTACGGCCCATA
CCGCCCAAATCCTTGGGACCATTCTCTGAGCAAACACCATCATACTTGAC
TGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAG
ACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGA
TGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAA
GAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAA
TATTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCAT
GCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGTTT
TGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACC
CACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCC
GATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGC
TATGTTCTCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGG
GTCCAATTGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACAAT
GCCTGGGCTTATGCCACTAACTTTGGTCCCGGAAAGTAAAGAAACTCATG
ACTTGATGGTGTCTTTTTCAGCCTGAACATTATTCTATGGAATCGATGTG
CTCTTGCGGAAAACTCTGTCATGGACTTATTAGCAGCTCTGGAATGTTAC
CATTTAGAATGCTATGCCCCTGATCTTTTATTTCCCNTTATAAAACGTTA
GTTTCTACTTTCATCTTAAAAAAGGCGGCCCTCTAAAGATCCAAC
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