EY663124

Overview
NameEY663124
Unique NameEY663124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.304e-31
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1
Query:  394 HAVYHGPEGLKTIAQRGHGLPGTFALGLKKLVTVEVQRLHFFDTVKVKCADAHAIASAAYKIRMKSQDVDSNTVTAFFDDT 636
            +AVYHGP GLK+IAQR HGL G F+LGL KL   EVQ L FFDTVK+KC+DAHAIA AA K  +  + VDS T+TA FD+T
Sbjct:  415 YAVYHGPAGLKSIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSDAHAIADAASKSEINLRVVDSTTITASFDET 495          

HSP 2 Score: 37.7354 bits (86), Expect = 5.304e-31
Identity = 21/40 (52.50%), Postives = 24/40 (60.00%), Query Frame = 3
Query:  636 TTLDDAR*LFISLTRSKSVPFSAASLAEEGETAISSGLTR 755
            TTLDD   LF      K VPF+A SLA E + +I S LTR
Sbjct:  496 TTLDDVDKLFKVFASGKPVPFTAESLAPEVQNSIPSSLTR 535          

HSP 3 Score: 29.261 bits (64), Expect = 5.304e-31
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  746 INEESTYLTHPVFNNYPT 799
            +  ES YLTHP+FN Y T
Sbjct:  533 LTRESPYLTHPIFNMYHT 550          

HSP 4 Score: 74.7146 bits (182), Expect = 8.323e-13
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 2
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQ 145
            +RM+P +I+G+S+DSSGK ALR+AM TREQHIR DKATSNICTAQ
Sbjct:  361 KRMMPGRIIGISVDSSGKQALRMAMQTREQHIRRDKATSNICTAQ 405          
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.543e-30
Identity = 55/81 (67.90%), Postives = 63/81 (77.78%), Query Frame = 1
Query:  394 HAVYHGPEGLKTIAQRGHGLPGTFALGLKKLVTVEVQRLHFFDTVKVKCADAHAIASAAYKIRMKSQDVDSNTVTAFFDDT 636
            + VYHGPEGLKTIA+R HGL GTFA GLKKL TV+VQ L FFDTVKV CAD+ AIA  AYK +M  + VD NT+T  FD+T
Sbjct:  411 YGVYHGPEGLKTIAKRVHGLAGTFAAGLKKLGTVQVQDLPFFDTVKVTCADSKAIAEEAYKHKMNLRIVDKNTITVAFDET 491          

HSP 2 Score: 34.2686 bits (77), Expect = 2.543e-30
Identity = 19/40 (47.50%), Postives = 24/40 (60.00%), Query Frame = 3
Query:  636 TTLDDAR*LFISLTRSKSVPFSAASLAEEGETAISSGLTR 755
            TT++D   LF      K V F+AAS+A E + AI SGL R
Sbjct:  492 TTIEDVDTLFKVFALGKPVTFTAASIAPEVQDAIPSGLVR 531          

HSP 3 Score: 27.335 bits (59), Expect = 2.543e-30
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  755 ESTYLTHPVFNNYPT 799
            E+ YLTHP+FN Y T
Sbjct:  532 ETPYLTHPIFNMYHT 546          

HSP 4 Score: 78.1814 bits (191), Expect = 7.528e-14
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 2
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQ 145
            +RM+P +I+GVS+DSSGKPALR+AM TREQHIR DKATSNICTAQ
Sbjct:  357 KRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQ 401          
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.303e-30
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 1
Query:  394 HAVYHGPEGLKTIAQRGHGLPGTFALGLKKLVTVEVQRLHFFDTVKVKCADAHAIASAAYKIRMKSQDVDSNTVTAFFDDT 636
            + VYHGPEGLKTIA+R HGL GTFA GLKKL TV+VQ L FFDTVKV CAD+ AIA  A K +M  + VD NT+T  FD+T
Sbjct:  411 YGVYHGPEGLKTIAKRVHGLAGTFAAGLKKLGTVQVQDLPFFDTVKVTCADSKAIAEEACKHKMNLRIVDKNTITVAFDET 491          

HSP 2 Score: 37.3502 bits (85), Expect = 3.303e-30
Identity = 20/40 (50.00%), Postives = 25/40 (62.50%), Query Frame = 3
Query:  636 TTLDDAR*LFISLTRSKSVPFSAASLAEEGETAISSGLTR 755
            TT++D   LF      K VPF+AAS+A E + AI SGL R
Sbjct:  492 TTIEDVDTLFKVFALGKPVPFTAASIAPEVQDAIPSGLVR 531          

HSP 3 Score: 27.335 bits (59), Expect = 3.303e-30
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  755 ESTYLTHPVFNNYPT 799
            E+ YLTHP+FN Y T
Sbjct:  532 ETPYLTHPIFNMYHT 546          

HSP 4 Score: 78.1814 bits (191), Expect = 7.528e-14
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 2
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQ 145
            +RM+P +I+GVS+DSSGKPALR+AM TREQHIR DKATSNICTAQ
Sbjct:  357 KRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQ 401          
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.568e-30
Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = 1
Query:  400 VYHGPEGLKTIAQRGHGLPGTFALGLKKLVTVEVQRLHFFDTVKVKCADAHAIASAAYKIRMKSQDVDSNTVTAFFDDT 636
            VYHGPEGLKTIA+R HGL GTFA GLKKL TV+VQ L FFDTVKV CAD+ AIA  AYK +M  + VD NT+T  FD+T
Sbjct:  413 VYHGPEGLKTIAKRVHGLAGTFASGLKKLGTVQVQDLPFFDTVKVTCADSKAIAEEAYKHKMNLRIVDKNTITVAFDET 491          

HSP 2 Score: 34.2686 bits (77), Expect = 5.568e-30
Identity = 19/40 (47.50%), Postives = 24/40 (60.00%), Query Frame = 3
Query:  636 TTLDDAR*LFISLTRSKSVPFSAASLAEEGETAISSGLTR 755
            TT++D   LF      K V F+AAS+A E + AI SGL R
Sbjct:  492 TTIEDVDTLFKVFALGKPVTFTAASIAPEVQDAIPSGLVR 531          

HSP 3 Score: 27.335 bits (59), Expect = 5.568e-30
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  755 ESTYLTHPVFNNYPT 799
            E+ YLTHP+FN Y T
Sbjct:  532 ETPYLTHPIFNMYHT 546          

HSP 4 Score: 78.1814 bits (191), Expect = 7.528e-14
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 2
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQ 145
            +RM+P +I+GVS+DSSGKPALR+AM TREQHIR DKATSNICTAQ
Sbjct:  357 KRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQ 401          
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.219e-29
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 1
Query:  400 VYHGPEGLKTIAQRGHGLPGTFALGLKKLVTVEVQRLHFFDTVKVKCADAHAIASAAYKIRMKSQDVDSNTVTAFFDDT 636
            VYHGPEGLKTIA+R HGL GTFA GLKKL TV+VQ L FFDTVKV C D+ AIA  AYK +M  + VD NT+T  FD+T
Sbjct:  416 VYHGPEGLKTIAKRVHGLAGTFAAGLKKLGTVQVQDLPFFDTVKVTCVDSKAIAEEAYKHKMNLRIVDKNTITVAFDET 494          

HSP 2 Score: 34.2686 bits (77), Expect = 1.219e-29
Identity = 19/40 (47.50%), Postives = 24/40 (60.00%), Query Frame = 3
Query:  636 TTLDDAR*LFISLTRSKSVPFSAASLAEEGETAISSGLTR 755
            TT++D   LF      K V F+AAS+A E + AI SGL R
Sbjct:  495 TTIEDVDTLFKVFALGKPVTFTAASIAPEVQDAIPSGLVR 534          

HSP 3 Score: 27.335 bits (59), Expect = 1.219e-29
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  755 ESTYLTHPVFNNYPT 799
            E+ YLTHP+FN Y T
Sbjct:  535 ETPYLTHPIFNMYHT 549          

HSP 4 Score: 78.1814 bits (191), Expect = 7.528e-14
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 2
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQ 145
            +RM+P +I+GVS+DSSGKPALR+AM TREQHIR DKATSNICTAQ
Sbjct:  360 KRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQ 404          
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.378e-29
Identity = 55/81 (67.90%), Postives = 63/81 (77.78%), Query Frame = 1
Query:  394 HAVYHGPEGLKTIAQRGHGLPGTFALGLKKLVTVEVQRLHFFDTVKVKCADAHAIASAAYKIRMKSQDVDSNTVTAFFDDT 636
            +AVYHGPEGLKTI QR HGL GTF+ GLKKL TVEVQ L FFDTVKVKC+DA AIA  A K  +  + VD+NT+T  FD+T
Sbjct:  412 YAVYHGPEGLKTIGQRVHGLAGTFSAGLKKLGTVEVQDLPFFDTVKVKCSDAKAIADVANKNDINLRIVDNNTITVSFDET 492          

HSP 2 Score: 40.0466 bits (92), Expect = 2.378e-29
Identity = 29/75 (38.67%), Postives = 37/75 (49.33%), Query Frame = 3
Query:  636 TTLDDAR*LFISLTRSKSVPFSAASLAEEGETAISSGLTRRVRI*HILFLTTTPRA*VAQMHQLXLSYDSPYALV 860
            TTL+D   LF      K VPF+A S+A+E E  I SGLTR        FLT          HQ+  SY + + L+
Sbjct:  493 TTLEDVDDLFKVFALGKPVPFTAQSIAQEVENLIPSGLTRETP-----FLT----------HQIFNSYHTEHELL 552          

HSP 3 Score: 75.8702 bits (185), Expect = 3.736e-13
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 2
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQ 145
            +RM+P +I+G+S+DS+GKPALR+AM TREQHIR DKATSNICTAQ
Sbjct:  358 KRMMPGRIIGLSVDSTGKPALRMAMQTREQHIRRDKATSNICTAQ 402          
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.496e-29
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  394 HAVYHGPEGLKTIAQRGHGLPGTFALGLKKLVTVEVQRLHFFDTVKVKCADAHAIASAAYKIRMKSQDVDSNTVTAFFDDT 636
            +AVYHGPEGLK+IAQR HGL G FALGLKKL T +VQ L FFDTVKV C+DA AI   A K  +  + VDSNT+T  FD+T
Sbjct:  421 YAVYHGPEGLKSIAQRVHGLAGVFALGLKKLGTAQVQDLPFFDTVKVTCSDATAIFDVAAKKEINLRLVDSNTITVAFDET 501          

HSP 2 Score: 35.039 bits (79), Expect = 4.496e-29
Identity = 21/40 (52.50%), Postives = 22/40 (55.00%), Query Frame = 3
Query:  636 TTLDDAR*LFISLTRSKSVPFSAASLAEEGETAISSGLTR 755
            TTLDD   LF      K V F+A SLA E   AI S LTR
Sbjct:  502 TTLDDVDKLFEVFASGKPVQFTAESLAPEFNNAIPSSLTR 541          

HSP 3 Score: 29.261 bits (64), Expect = 4.496e-29
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  746 INEESTYLTHPVFNNYPT 799
            +  ES YLTHP+FN Y T
Sbjct:  539 LTRESPYLTHPIFNMYHT 556          

HSP 4 Score: 75.0998 bits (183), Expect = 6.373e-13
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 2
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQ 145
            +RM+P +I+GVS+DSSGK ALR+AM TREQHIR DKATSNICTAQ
Sbjct:  367 KRMMPGRIIGVSVDSSGKQALRMAMQTREQHIRRDKATSNICTAQ 411          
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.981e-26
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 1
Query:  394 HAVYHGPEGLKTIAQRGHGLPGTFALGLKKLVTVEVQRLHFFDTVKVKCADAHAIASAAYKIRMKSQDVDSNTVTAFFDDT 636
            +AVYHGPEGLK IAQR HGL G FALGLKKL  +EVQ L FFDTVKVK ++A AIA AA K  +  + VD NT+TA FD+T
Sbjct:  434 YAVYHGPEGLKAIAQRVHGLAGVFALGLKKL-GLEVQDLGFFDTVKVKTSNAKAIADAAIKSEINLRVVDGNTITAAFDET 513          

HSP 2 Score: 36.965 bits (84), Expect = 4.981e-26
Identity = 34/90 (37.78%), Postives = 43/90 (47.78%), Query Frame = 3
Query:  636 TTLDDAR*LFISLTRSKSVPFSAASLAEEGETAISSGLTRR-VRI*HILFLT-TTPRA*VAQMHQLXLSYDSPYALVYSLGVLVHGLNAT 899
            TTL+D   LF      K V F+AASLA E + AI SGL R    + H +F T  T    +  +H+L     S    +  LG     LNAT
Sbjct:  514 TTLEDVDKLFKVFAGGKPVSFTAASLAPEFQNAIPSGLVRESPYLTHPIFNTYQTEHELLRYIHRLQSKDLSLCHSMIPLGSCTMKLNAT 603          

HSP 3 Score: 75.0998 bits (183), Expect = 6.373e-13
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 2
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQ 145
            +RM+P +I+GVS+DSSGK ALR+AM TREQHIR DKATSNICTAQ
Sbjct:  380 KRMMPGRIIGVSVDSSGKQALRMAMQTREQHIRRDKATSNICTAQ 424          
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_NOSP7 (Glycine dehydrogenase [decarboxylating] OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 2
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQV 148
            +R++P +IVGVS D+ GKPALR+A+ TREQHIR +KATSNICTAQV
Sbjct:  305 KRLVPGRIVGVSKDAQGKPALRLALQTREQHIRREKATSNICTAQV 350          
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP2_COLP3 (Glycine dehydrogenase [decarboxylating] 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gcvP2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 2
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQ 145
            +R IP +++GVSIDS GKPALR+AM TREQHIR +KA SNICTAQ
Sbjct:  294 KRTIPGRVIGVSIDSKGKPALRMAMQTREQHIRREKANSNICTAQ 338          
The following BLAST results are available for this feature:
BLAST of EY663124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
GCSP2_ARATH5.304e-3165.43Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP_FLATR2.543e-3067.90Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_FLAAN3.303e-3066.67Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR5.568e-3069.62Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSPA_FLAPR1.219e-2968.35Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_SOLTU2.378e-2967.90Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP1_ARATH4.496e-2965.43Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSP_PEA4.981e-2666.67Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_NOSP75.395e-1271.74Glycine dehydrogenase [decarboxylating] OS=Nostoc ... [more]
GCSP2_COLP35.395e-1273.33Glycine dehydrogenase [decarboxylating] 2 OS=Colwe... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-051-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY663124 ID=EY663124; Name=EY663124; organism=Citrus sinensis; type=EST; length=928bp
CCACGCGTCCGAGAGGATGATTCCCTCGAAGATTGTTGGTGTTAGTATTG
ATTCTTCAGGGAAGCCTGCCCTGCGTGTGGCTATGCTGACTAGGGAGCAG
CATATCCGCATGGACAAGGCTACCAGCAACATCTGCACCGCTCAAGTAAC
ATATTATTGTTATTCCTGATCTGTTTCTGGTTTACTTTGGAGGACTGCCT
GTGTAGAGATTGAAAAACTGCTTTCTAATTTTTTGAAAGTTTGAAGACTG
CACAACCTGTCTAGCTCAACAATTTTGTCATAAACACATGCATTCATATT
TTCTGCACCATAAAACATGCCCAATGAACTGACTTTGCTTTGGGTGAATA
AAACTTATCTATGTAGGCATTACTTGCAAACATGGCTGCTATGCATGCTG
TTTATCACGGACCTGAAGGCCTTAAAACCATTGCTCAAAGAGGCCATGGA
CTACCCGGGACTTTCGCCCTTGGGTTAAAAAAGCTGGTGACAGTGGAAGT
CCAGAGGCTTCACTTCTTTGACACTGTGAAGGTGAAGTGTGCGGATGCAC
ATGCCATTGCCAGTGCTGCTTACAAGATTCGAATGAAATCTCAGGATGTA
GATTCCAACACCGTCACTGCTTTCTTTGATGACACACCACCTTGGACGAT
GCTCGATAGCTTTTCATAAGTCTCACGAGGAGCAAATCAGTTCCATTCTC
TGCTGCATCTCTGGCTGAAGAGGGTGAGACTGCAATTTCGTCTGGATTAA
CGAGGAGAGTACGTATCTGACACATCCTGTTTTTAACAACTACCCCACGA
GCGTGAGTTGCTCAGATGCATCAACTGNTGCTATCATATGACTCTCCCTA
TGCCTTAGTATACTCCCTTGGGGTCTTGGTACATGGACTGAATGCAACAC
CGAATTGATACCATGACATGCCTACCTT
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