EY662819

Overview
NameEY662819
Unique NameEY662819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6276 contig Csv1_Contig6276:212..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY662819 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 9.471e-72
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 1
Query:   37 NTPSPIFGGSTGGLLRLAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 438
            +TPSPIF GSTGGLLR AQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN+RSIGKNVSPIEVKFTGKQVYDL
Sbjct:   74 STPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207          
BLAST of EY662819 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.047e-70
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 1
Query:   37 NTPSPIFGGSTGGLLRLAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 438
            NTPSPIFGGSTGGLLR AQVEEFYVITWESPKEQIFEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN+RSIGKN S IEVKFTGKQVYD+
Sbjct:   75 NTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208          
BLAST of EY662819 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 1.975e-69
Identity = 127/134 (94.78%), Postives = 129/134 (96.27%), Query Frame = 1
Query:   37 NTPSPIFGGSTGGLLRLAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 438
            NTPSPIF GSTGGLLR AQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:   79 NTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212          
BLAST of EY662819 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 4.399e-69
Identity = 126/134 (94.03%), Postives = 129/134 (96.27%), Query Frame = 1
Query:   37 NTPSPIFGGSTGGLLRLAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 438
            NTPSPIFGGSTGGLLR AQVEEFYVITWESPKEQIFEMPTGGAAIMREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR+GVGQN+RSIGKN SPIEVKFTGKQVYDL
Sbjct:   71 NTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204          
BLAST of EY662819 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.280e-68
Identity = 126/134 (94.03%), Postives = 126/134 (94.03%), Query Frame = 1
Query:   37 NTPSPIFGGSTGGLLRLAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 438
            NTPSPIF GSTGGLLR AQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:   71 NTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204          
BLAST of EY662819 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.280e-68
Identity = 126/134 (94.03%), Postives = 126/134 (94.03%), Query Frame = 1
Query:   37 NTPSPIFGGSTGGLLRLAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 438
            NTPSPIF GSTGGLLR AQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:   75 NTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208          
BLAST of EY662819 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.118e-67
Identity = 121/134 (90.30%), Postives = 127/134 (94.78%), Query Frame = 1
Query:   37 NTPSPIFGGSTGGLLRLAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 438
            +TPSPIFGGSTGGLLR AQVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN GR+GVGQN+RSIGKNVSPIEVKFTGK  +D+
Sbjct:   72 STPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205          
BLAST of EY662819 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.384e-53
Identity = 98/131 (74.81%), Postives = 114/131 (87.02%), Query Frame = 1
Query:   37 NTPSPIFGGSTGGLLRLAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQV 429
            +TPSPIFGGSTGGLLR AQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNLLK  +KEQCLAL T+LR+K+K+   FYRVFP+G+VQYLHP DGVYPEKVN GR G  QN R IG+NV+PI+VKF+G+ +
Sbjct:   61 DTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVNPIKVKFSGRMM 191          
BLAST of EY662819 vs. ExPASy Swiss-Prot
Match: PSAD_GUITH (Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.127e-48
Identity = 93/138 (67.39%), Postives = 109/138 (78.99%), Query Frame = 1
Query:   25 TAAFNTPSPIFGGSTGGLLRLAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 435
            T     PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAIMR+G NLL LARKEQCLALGT++++ +KI  Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR GVG    SIGKN++P ++KFT K   D
Sbjct:    4 TLNLQIPSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIGKNLNPAQIKFTNKSFCD 141          
BLAST of EY662819 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.127e-48
Identity = 90/138 (65.22%), Postives = 110/138 (79.71%), Query Frame = 1
Query:   25 TAAFNTPSPIFGGSTGGLLRLAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 435
            T   N P+PIFGGSTGGLLR A+VEEFY ITW    E +FE+PTGGAAIMR G NLL+LARKEQC+ALG +L+ K+KI  Y+ YRV+P+GEVQ+LHPKDGV+PEKVNPGR  VG N R IG+N  P ++KF G++ +D
Sbjct:   78 TLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGRVAVGSNKRRIGQNPDPAKLKFKGQETFD 215          
The following BLAST results are available for this feature:
BLAST of EY662819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_CUCSA9.471e-7297.01Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SOLLC3.047e-7094.78Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SPIOL1.975e-6994.78Photosystem I reaction center subunit II, chloropl... [more]
PSAD_NICSY4.399e-6994.03Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH1.280e-6894.03Photosystem I reaction center subunit II-2, chloro... [more]
PSAD1_ARATH1.280e-6894.03Photosystem I reaction center subunit II-1, chloro... [more]
PSAD_HORVU4.118e-6790.30Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CHLRE3.384e-5374.81Photosystem I reaction center subunit II, chloropl... [more]
PSAD_GUITH1.127e-4867.39Photosystem I reaction center subunit II OS=Guilla... [more]
PSAD_CYAPA1.127e-4865.22Photosystem I reaction center subunit II, cyanelle... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-048-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662819 ID=EY662819; Name=EY662819; organism=Citrus sinensis; type=EST; length=640bp
TCGGTCAACCCACGCGTCCGATAAACTGCTGCCTTCAACACCCCATCTCC
GATCTTCGGAGGCAGCACCGGCGGGCTGCTGCGGTTGGCTCAGGTGGAAG
AGTTTTATGTGATCACATGGGAGTCTCCTAAGGAGCAAATATTTGAAATG
CCCACTGGGGGTGCGGCCATTATGAGAGAAGGTCCGAATTTGCTGAAGCT
GGCTAGGAAAGAGCAGTGCTTGGCTCTGGGGACAAGGCTGAGGTCCAAGT
ACAAGATTAAGTACCAGTTTTACCGAGTGTTTCCCAATGGAGAGGTTCAG
TATTTGCATCCCAAGGATGGTGTTTATCCTGAGAAAGTGAACCCCGGAAG
GGAAGGAGTTGGGCAGAATTACAGGTCTATTGGTAAGAATGTGAGTCCTA
TTGAGGTCAAGTTTACAGGGAAGCAAGTGTATGATCTGTAAATTTAAATT
GTAAGCTGCTAAGCTGACGGGCCTCGGATGATCTGTTGATTAATTGTTGT
GATCATTTACTTGTTTGTATTCGTGTTTTCTTTTCCTTAAAAATATTGTA
TGAAAGCAAGACTTGATCGCTGAAACTATTTTATACATGCAATATCTCTT
TTTAGTTTAAAAAAAANNNNNNNNNNNNAAAAAAAAAAAA
back to top