EY662788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 419.083 bits (1076), Expect = 1.750e-116 Identity = 200/247 (80.97%), Postives = 222/247 (89.88%), Query Frame = 2 Query: 38 APEKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPLRHWATHLSDPLPQPFLTTSS 778 AP+KS + + ++DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKV+LV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD KRLYPGG+ FDPLGLAADPEK A LQLAEIKHARL MVAFLGFAVQA TGK PL +WATHLSDPL + T S Sbjct: 42 APKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 288
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 405.986 bits (1042), Expect = 1.533e-112 Identity = 197/247 (79.76%), Postives = 219/247 (88.66%), Query Frame = 2 Query: 38 APEKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPLRHWATHLSDPLPQPFLTTSS 778 +P+K+K + SDRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN G++IGTR EA D +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKV+LV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD KRLYPGG+ FDPLGLA+DP KKA LQLAEIKHARL MV FLGFAVQA TGK PL +WATHLSDPL + T S Sbjct: 41 SPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 4.627e-101 Identity = 179/237 (75.53%), Postives = 201/237 (84.81%), Query Frame = 2 Query: 23 RKVFPAPEKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPLRHWAT 733 +K P P+KS+Q DR +W+PGA PEWLDGS++GD GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG E+S+++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKV+LVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDP KR+YPGG FDPLGLAADPEK TL+LAEIKH+RL MVAFL FA+QA TGK P+ AT Sbjct: 38 KKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 238.039 bits (606), Expect = 5.530e-62 Identity = 125/212 (58.96%), Postives = 151/212 (71.23%), Query Frame = 2 Query: 83 LWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDP*KRLYPGGELFDPLGLAADPEKKA-TLQLAEIKHARLVMVAFLGFAVQAVVTGK 709 LW P PEWLDGSL GD GFDP GL KP+E++ D DQN AKN G + D S+ L PY+EVFGL RFRECELIHGRWAMLA LGAL E TG++W +AGKV+L +G+SY G LPFSIT LIWIEV+++G EF RNSE +P KR YPGG +FDPL LA++ E++A L+ AEIKHARL MV+F G+ VQA+ TG+ Sbjct: 52 LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGE 261
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.469e-30 Identity = 86/225 (38.22%), Postives = 117/225 (52.00%), Query Frame = 2 Query: 86 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAV-QAVVTGKCPLRHWATHLSDP 748 W PG P +LDGS GD+GFD GLG+ PA L+R++E ELIH RWAMLA G + E L W A + + G ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D K+ YPGG FDPLG + DP K L++ EIK+ RL ++A +GF V Q+ G PL + ATHL+DP Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEV------------------PAN-------------------------LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADP 229
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 3.272e-30 Identity = 87/225 (38.67%), Postives = 112/225 (49.78%), Query Frame = 2 Query: 86 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VQLVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAV-QAVVTGKCPLRHWATHLSDP 748 W+PG P LDGS GD+GFDP GL E +RF+E E+ H RWAML G L E L W A + L +G ++YLG P+P+ ++ T++ IE L I + E QR E DP K+ YPGG FDPLG + DP K L+L EIK+ RL M+AF+GF V Q+ G PL + ATHL+DP Sbjct: 48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE-------------------------------------------NFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADP 228
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.582e-30 Identity = 96/270 (35.56%), Postives = 131/270 (48.52%), Query Frame = 2 Query: 35 PAPEKSKQSSGSSDR-PLWY-------------PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVQLVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPLRHWATHLSDPLPQPFLT 769 PAP KSK S +SD WY ++ PE+L+G + GDYG+DPFGLGK E N AK ++ ELIH RWAML G + E L W G + L++G++ Y G+ +P ++ + EV+++G E+ R + LD +L+PGG FDPLGLA DPE+ A L++ EIK+ RL M A LGF +QA VTG+ P+ + A HLSDP LT Sbjct: 44 PAPAKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPE-----------NFAK--------------------------------YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLT 268
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 7.061e-25 Identity = 86/268 (32.09%), Postives = 118/268 (44.03%), Query Frame = 2 Query: 32 FPAPEKSKQSSGSS-----DRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------NSELDP*KRLYPGGELFDPLGLAA-DPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPLRHWATHLSDP 748 F AP S+ + S+ DRPLW+PG+ PEWLDGSL GD+GFDP GLG E L+++ + EL+H RWAML G E+LT I +W AG+ + + TTL IE+++IG+ E +R N++L YPGG FDPLG + P K L+ EIK+ RL M+A +G Q + TG P+ + HL+DP Sbjct: 45 FIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWN-------------------------------------------AQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT-----------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.204e-24 Identity = 85/258 (32.95%), Postives = 112/258 (43.41%), Query Frame = 2 Query: 59 SSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------------NSELDP*KRLYPGGELFDPLGLAA---------DPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPL 718 ++ ++ + W P K PEWLDGSL GD+GFDP GLGK +L++ +RE ELIHGRWAMLA LG + TGI W +AG G PFS TL+ ++L++G++E +R N ++ YPGG+ FDPL LA D +K L+LAEIKHARL M+A L F +A GK PL Sbjct: 51 AAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADP--------GAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.054e-24 Identity = 92/257 (35.80%), Postives = 117/257 (45.53%), Query Frame = 2 Query: 47 KSKQSSGS----SDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPLRHWATHLSDP 748 KSK SGS SDRPL+ P +L G GDYG+D GL E AKN RE E+IH RWAML LG +T E L G+ W AG EG YLG P +++ I +V+++G +E R DP +YPGG FDPLGLA DPE A L++ E+K+ RL M + GF VQA+VTGK P+ + + HL+DP Sbjct: 40 KSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDP---IYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249 The following BLAST results are available for this feature:
BLAST of EY662788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >EY662788 ID=EY662788; Name=EY662788; organism=Citrus sinensis; type=EST; length=909bpback to top |