EY662788

Overview
NameEY662788
Unique NameEY662788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 1.750e-116
Identity = 200/247 (80.97%), Postives = 222/247 (89.88%), Query Frame = 2
Query:   38 APEKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPLRHWATHLSDPLPQPFLTTSS 778
            AP+KS + + ++DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKV+LV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD  KRLYPGG+ FDPLGLAADPEK A LQLAEIKHARL MVAFLGFAVQA  TGK PL +WATHLSDPL    + T S
Sbjct:   42 APKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 288          
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 1.533e-112
Identity = 197/247 (79.76%), Postives = 219/247 (88.66%), Query Frame = 2
Query:   38 APEKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPLRHWATHLSDPLPQPFLTTSS 778
            +P+K+K  +  SDRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN  G++IGTR EA D +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKV+LV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD  KRLYPGG+ FDPLGLA+DP KKA LQLAEIKHARL MV FLGFAVQA  TGK PL +WATHLSDPL    + T S
Sbjct:   41 SPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285          
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 4.627e-101
Identity = 179/237 (75.53%), Postives = 201/237 (84.81%), Query Frame = 2
Query:   23 RKVFPAPEKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPLRHWAT 733
            +K  P P+KS+Q     DR +W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG   E+S+++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKV+LVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDP KR+YPGG  FDPLGLAADPEK  TL+LAEIKH+RL MVAFL FA+QA  TGK P+   AT
Sbjct:   38 KKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273          
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 5.530e-62
Identity = 125/212 (58.96%), Postives = 151/212 (71.23%), Query Frame = 2
Query:   83 LWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDP*KRLYPGGELFDPLGLAADPEKKA-TLQLAEIKHARLVMVAFLGFAVQAVVTGK 709
            LW P    PEWLDGSL GD GFDP GL KP+E++    D  DQN AKN  G +        D  S+   L PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TG++W +AGKV+L +G+SY G  LPFSIT LIWIEV+++G  EF RNSE +P KR YPGG +FDPL LA++ E++A  L+ AEIKHARL MV+F G+ VQA+ TG+
Sbjct:   52 LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGE 261          
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.469e-30
Identity = 86/225 (38.22%), Postives = 117/225 (52.00%), Query Frame = 2
Query:   86 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAV-QAVVTGKCPLRHWATHLSDP 748
            W PG   P +LDGS  GD+GFD  GLG+                   PA                          L+R++E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D  K+ YPGG  FDPLG + DP K   L++ EIK+ RL ++A +GF V Q+   G  PL + ATHL+DP
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEV------------------PAN-------------------------LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADP 229          
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.272e-30
Identity = 87/225 (38.67%), Postives = 112/225 (49.78%), Query Frame = 2
Query:   86 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VQLVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAV-QAVVTGKCPLRHWATHLSDP 748
            W+PG   P  LDGS  GD+GFDP GL    E                                             +RF+E E+ H RWAML   G L  E L    W  A +   L +G ++YLG P+P+ ++ T++ IE L I + E QR  E DP K+ YPGG  FDPLG + DP K   L+L EIK+ RL M+AF+GF V Q+   G  PL + ATHL+DP
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE-------------------------------------------NFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADP 228          
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.582e-30
Identity = 96/270 (35.56%), Postives = 131/270 (48.52%), Query Frame = 2
Query:   35 PAPEKSKQSSGSSDR-PLWY-------------PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVQLVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPLRHWATHLSDPLPQPFLT 769
            PAP KSK  S +SD    WY               ++ PE+L+G + GDYG+DPFGLGK  E           N AK                                ++  ELIH RWAML   G +  E L            W   G + L++G++  Y G+ +P ++   +  EV+++G  E+ R  + LD   +L+PGG  FDPLGLA DPE+ A L++ EIK+ RL M A LGF +QA VTG+ P+ + A HLSDP     LT
Sbjct:   44 PAPAKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPE-----------NFAK--------------------------------YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLT 268          
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.061e-25
Identity = 86/268 (32.09%), Postives = 118/268 (44.03%), Query Frame = 2
Query:   32 FPAPEKSKQSSGSS-----DRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------NSELDP*KRLYPGGELFDPLGLAA-DPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPLRHWATHLSDP 748
            F AP  S+  + S+     DRPLW+PG+  PEWLDGSL GD+GFDP GLG   E L+++                                            + EL+H RWAML   G    E+LT I      +W  AG+ +    +           TTL  IE+++IG+ E +R                 N++L      YPGG  FDPLG  +  P K   L+  EIK+ RL M+A +G   Q + TG  P+ +   HL+DP
Sbjct:   45 FIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWN-------------------------------------------AQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT-----------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.204e-24
Identity = 85/258 (32.95%), Postives = 112/258 (43.41%), Query Frame = 2
Query:   59 SSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------------NSELDP*KRLYPGGELFDPLGLAA---------DPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPL 718
            ++ ++ +  W P  K       PEWLDGSL GD+GFDP GLGK   +L++                                           +RE ELIHGRWAMLA LG    +  TGI W +AG           G   PFS  TL+  ++L++G++E +R                       N      ++ YPGG+ FDPL LA          D +K   L+LAEIKHARL M+A L F  +A   GK PL
Sbjct:   51 AAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADP--------GAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256          
BLAST of EY662788 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.054e-24
Identity = 92/257 (35.80%), Postives = 117/257 (45.53%), Query Frame = 2
Query:   47 KSKQSSGS----SDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDP*KRLYPGGELFDPLGLAADPEKKATLQLAEIKHARLVMVAFLGFAVQAVVTGKCPLRHWATHLSDP 748
            KSK  SGS    SDRPL+        P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +T E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG  FDPLGLA DPE  A L++ E+K+ RL M +  GF VQA+VTGK P+ + + HL+DP
Sbjct:   40 KSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDP---IYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249          
The following BLAST results are available for this feature:
BLAST of EY662788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB4A_ARATH1.750e-11680.97Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.533e-11279.76Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH4.627e-10175.53Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE5.530e-6258.96Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB11_SOLLC1.469e-3038.22Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU3.272e-3038.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB26_ARATH5.582e-3035.56Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB12_PETHY7.061e-2532.09Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB4_SPIOL1.204e-2432.95Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB23_POLMU2.054e-2435.80Chlorophyll a-b binding protein type 1 member F3, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-048-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662788 ID=EY662788; Name=EY662788; organism=Citrus sinensis; type=EST; length=909bp
TCTCCGTCGACCCACGCGTCCGCGGAAAGTTTTTCCAGCACCCGAAAAGT
CGAAACAGTCTTCCGGATCCTCTGATCGTCCACTTTGGTACCCAGGAGCC
AAGGCACCCGAGTGGCTCGACGGGAGCTTGGTGGGTGACTACGGGTTCGA
CCCGTTCGGGCTGGGCAAGCCGGCGGAGTACTTGCAGTATGACTATGACT
CGTTGGACCAGAACTTGGCTAAGAACCCGGCTGGTGATATTATTGGGACG
AGGATTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGTACACTGA
AGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCATGGACGCT
GGGCCATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGG
ATTACTTGGCAAGACGCTGGCAAGGTACAGTTAGTTGAAGGATCATCATA
CCTGGGGCAACCACTTCCATTCTCAATAACAACGTTGATATGGATTGAGG
TTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCA
TAGAAGAGACTCTACCCGGGAGGAGAGCTTTTTGATCCTCTGGGCTTGGC
CGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATCAAGCACG
CCCGCCTTGTCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTC
ACCGGAAAATGCCCTCTCAGACACTGGGCTACCCACTTGAGCGATCCTCT
TCCTCAACCATTCTTGACAACTTCATCGCTTAGATTTCTGGAGTAGCCTC
CAGTACTTGGCAGTTGGCACTATTGTTATTATATTATATGCGCCCTATCT
GTAAAATGATTTATCACCGTTGACAGCTTAGGGGGATGCTATGGCTGCAT
ATTTTCAAG
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