EY662247

Overview
NameEY662247
Unique NameEY662247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY662247 vs. ExPASy Swiss-Prot
Match: CRS2A_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 3.981e-95
Identity = 172/246 (69.92%), Postives = 198/246 (80.49%), Query Frame = 1
Query:  145 MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-DDNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALGQGVEAVKTLVLHGFDQNISRFNMGEKYKYHAV 876
            M  A S+P T    P+   F Q +  S R   + ASLP  DN   K EYTPWLIVGLGNPG+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGESVGPLAA+YQ+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  L QGVE VKTLV  GF  +ISRFN+G+KYK+H V
Sbjct:    1 MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYKFHKV 246          
BLAST of EY662247 vs. ExPASy Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 5.036e-90
Identity = 164/224 (73.21%), Postives = 190/224 (84.82%), Query Frame = 1
Query:  205 PQKRQVSTRLCVHASLPDDNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALGQGVEAVKTLVLHGFDQNISRFNMGEKYKYHAV 876
            P  R+   R+C   S  +D+  FKVEYTPWLIVGLGNPG KYHGTRHNVGFEMID +A+ + + MNTIQSKALIGIG+I +VPILLAKPQ YMNFSGESVG LA+HY+VPLRHIL+IYDEM+L NGVLRLQPKGG G+HNG+KSVM HLDG R FPRL IGIG PPG MDMKA+LLQKFSP+E++QI+ AL QG EAVKTLVL+GF+Q ISRFN+ +KYK+H V
Sbjct:   18 PVFRKQRFRVCSSTSGGEDDR-FKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240          
BLAST of EY662247 vs. ExPASy Swiss-Prot
Match: CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.860e-85
Identity = 165/263 (62.74%), Postives = 196/263 (74.52%), Query Frame = 1
Query:   88 ALPRLCSFIFAS*KPKNRSMLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPDDNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALGQGVEAVKTLVLHGFDQNISRFNMGEKYKYHAV 876
            A+P   S   A   P  R    +L+AP   I  PR  PF           V +S+PD   G  VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID AL QGV+AV+TLVL GF  +  RFN+ +KYK+H V
Sbjct:    7 AIPSTSSHFSAPFLPSFRMPRKSLTAPLHRIRRPR--PFT----------VVSSVPDPAAG-PVEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHRV 256          
BLAST of EY662247 vs. ExPASy Swiss-Prot
Match: CRS2_ORYSJ (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 8.321e-85
Identity = 153/223 (68.61%), Postives = 184/223 (82.51%), Query Frame = 1
Query:  208 QKRQVSTRLCVHASLPDDNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALGQGVEAVKTLVLHGFDQNISRFNMGEKYKYHAV 876
            ++ ++  R+ V AS+PD       EYTPWLI GLGNPG KYHGTRHNVGFEM+D IA+ + I MNTIQSK+L+GIGSIGEVP+LL KPQ+Y+N+SGE++GPLAA+YQVPLRHILV+YDEMSL NGVLRLQ KGGHG HNGL++VM  LD  RE PRL IGIG+PPGKMD +A+LLQKFS  ER QID AL QGV+AV+TLVL GF  +I RFN+ +KYK+H+V
Sbjct:   38 RRTRLRRRIAVVASVPDP-AARPAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFSGSIERFNLVQKYKFHSV 259          
BLAST of EY662247 vs. ExPASy Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 4.018e-63
Identity = 115/195 (58.97%), Postives = 149/195 (76.41%), Query Frame = 1
Query:  283 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALGQGVEAVKTLVLHGFDQNISRFNMGEKYKY 867
            + PWL +GLGNPG KY GTRHN+GFEMID  A++  I MN +  KA++G G + ++P++LAKPQ YMN SGES GPLAA+Y++PL  +LV++D+M L  GVLRLQ KGGHG HNGLKSVMNH  G REF RL IGIG PPG+MD KA+LLQKFS   RE++D AL +GV+A+K ++   F ++   FN+ +KYK+
Sbjct:   16 HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFNVEQKYKH 210          
BLAST of EY662247 vs. ExPASy Swiss-Prot
Match: PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 3.520e-59
Identity = 104/186 (55.91%), Postives = 143/186 (76.88%), Query Frame = 1
Query:  289 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALGQGVEAVKTLVLHGFDQNISRFN 846
            PWLIVGLGNPG KY GTRHNVGFEM+D +A A+ I+MNT+  KAL G G IG +PI+LAKPQ +MN SGESVG + + Y++PL+ +LV+YD++ L  G LRL PKGGHG HNG++S+++ L G R+FPRL IGIG PPGKMD   ++L++F+  E+E++D     G+EA++ L+L GF+++ +  N
Sbjct:   94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVN 279          
BLAST of EY662247 vs. ExPASy Swiss-Prot
Match: PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.295e-57
Identity = 106/204 (51.96%), Postives = 149/204 (73.04%), Query Frame = 1
Query:  244 ASLPDDNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALGQGVEAVKTLVLHGFDQNISRFNMGE 855
            A+   D G  K    PWL VGLGNPG  Y GTRHNVGFEMID IA+A+ I+++++Q KA++G G IG+ PI+LAKPQ +MN SGESVG L +++++PL  +LV+YD++ L    LRL PKGGHG HNG++S++NHL   R+FPRL IGIG PPGKMD   ++L+ F+  E+E++D A  +G+EAV+ + L GF+++ +  N  +
Sbjct:   44 AAAAGDGGALK----PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVNTAQ 243          
BLAST of EY662247 vs. ExPASy Swiss-Prot
Match: CRS2L_ORYSJ (CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.623e-38
Identity = 83/143 (58.04%), Postives = 97/143 (67.83%), Query Frame = 1
Query:  199 PFPQKRQVSTRLCVHASLPDDNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNG 627
            PF  KR  ST      SL   +    V   PWL VGLGNPG KY  TRHNVGF+MID  AQ+Q I++     KAL G G +  VP+LLAKPQ YMN SGESVGPLAA+Y++PL  +LV +D+M L  GVLRLQPKGG+G HNG
Sbjct:   34 PFISKRHASTS---QTSLSSSSSSCSV-INPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172          
BLAST of EY662247 vs. ExPASy Swiss-Prot
Match: PTH_CLOD6 (Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.843e-38
Identity = 74/185 (40.00%), Postives = 122/185 (65.95%), Query Frame = 1
Query:  292 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALGQGVEAVKTLVLHGFDQNISRFN 846
            +++VGLGNPG KY  TRHNVGF++ID +A+   I++  I+ KALIG G +G   +LL KPQ YMN SGE++  +  +Y+V L +I+V+YD++ L  G +R++ KG  G HNG+KS+   L G  +FPR+ +G+  P    D+  ++L +F   E + I+ AL +  +A+ +++    D +++++N
Sbjct:    2 YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKPQTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSITKCL-GSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMSMNKYN 185          
BLAST of EY662247 vs. ExPASy Swiss-Prot
Match: PTH_CHLSY (Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pth PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.947e-37
Identity = 78/186 (41.94%), Postives = 118/186 (63.44%), Query Frame = 1
Query:  292 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQV-PLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALGQGVEAVKTLVLHGFDQNISRFN 846
            WLIVGLGNPG +Y  TRHN+GF  +D +A+   +     ++ + +  G+I    ++LAKPQ YMN SG++V  L   Y++ P R +LVIYD++ L    LR++ +G  G HNG++S++  L G  EFPRL +GIG PPGKMD   Y+L +F+P E   +   LG+  +AV+ ++  G    ++R+N
Sbjct:    2 WLIVGLGNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKPQTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQL-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTAMNRYN 186          
The following BLAST results are available for this feature:
BLAST of EY662247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CRS2A_ARATH3.981e-9569.92Chloroplastic group IIB intron splicing facilitato... [more]
CRS2B_ARATH5.036e-9073.21Chloroplastic group IIB intron splicing facilitato... [more]
CRS2_MAIZE2.860e-8562.74Chloroplastic group IIB intron splicing facilitato... [more]
CRS2_ORYSJ8.321e-8568.61Chloroplastic group IIB intron splicing facilitato... [more]
PTHM_ARATH4.018e-6358.97Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidop... [more]
PTHC_ARATH3.520e-5955.91Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidop... [more]
PTHM_ORYSJ3.295e-5751.96Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sa... [more]
CRS2L_ORYSJ2.623e-3858.04CRS2-like protein, chloroplastic OS=Oryza sativa s... [more]
PTH_CLOD65.843e-3840.00Peptidyl-tRNA hydrolase OS=Clostridium difficile (... [more]
PTH_CHLSY4.947e-3741.94Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-042-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662247 ID=EY662247; Name=EY662247; organism=Citrus sinensis; type=EST; length=939bp
ACTGGTCGCCTGCGGTACCGGTCCGGAATCCTTCGTCAACCGCGCGTCCG
AACACACTTACCAGAAACGTTATAAGCCTCGAACTGAGCTCTGCCACGCC
TCTGTTCTTTCATTTTTGCGTCTTAGAAACCCAAGAATAGGTCAATGTTG
TATGCACTCTCTGCCCCAAAAACTTGCATTTCCTGTCCGAGAGGGCCTCC
CTTTCCTCAAAAGCGTCAAGTTTCAACAAGGCTTTGTGTGCATGCTTCGT
TGCCAGATGATAATGGTGGATTTAAAGTGGAGTATACACCTTGGTTGATT
GTCGGATTGGGTAACCCTGGGATTAAGTACCACGGCACTAGGCACAATGT
TGGATTTGAAATGATTGATCACATTGCTCAAGCGCAACGCATTGCTATGA
ACACAATACAGTCAAAGGCTTTAATTGGAATAGGTTCCATTGGAGAGGTG
CCGATTTTGTTGGCAAAACCTCAGGCATACATGAATTTCAGTGGGGAATC
GGTCGGGCCTCTTGCTGCACATTATCAAGTACCGCTGCGTCACATTTTAG
TGATCTATGATGAGATGAGTTTAATGAATGGTGTTCTCAGACTTCAGCCA
AAAGGAGGGCATGGCCATCACAATGGGTTGAAAAGTGTGATGAACCATCT
GGATGGTTGTCGTGAGTTTCCTCGGCTGTGCATAGGTATTGGAAATCCAC
CTGGCAAAATGGACATGAAAGCTTATCTACTACAGAAGTTCAGCCCCATA
GAGCGGGAACAGATTGATGCAGCCCTTGGACAAGGAGTTGAGGCCGTGAA
GACCTTGGTGCTNCATGGATTTGATCAGAACATTTCTAGATTTAACATGG
GGGAGAAATATAAGTATCACGCGGTTTGACCGTCCGCGACAAAGATTGCA
GAATAGAGAGATTAAGTGTTCCTCTGATCGTACCGTCAT
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