EY706638

Overview
NameEY706638
Unique NameEY706638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY706638 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.901e-23
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 3 
Query:    9 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 128
            PD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct:  201 PDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 240

HSP 2 Score: 46.595 bits (109), Expect = 4.901e-23
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:  106 GRVQLRTSDDHIADPVANNA*AYATNFVPGK 198
            G+  +    DH+ADPVANNA AYATNFVPGK
Sbjct:  233 GKGPIENLFDHVADPVANNAWAYATNFVPGK 263
[Close]
BLAST of EY706638 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.901e-23
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 3 
Query:    9 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 128
            PD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct:  201 PDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 240

HSP 2 Score: 46.595 bits (109), Expect = 4.901e-23
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:  106 GRVQLRTSDDHIADPVANNA*AYATNFVPGK 198
            G+  +    DH+ADPVANNA AYATNFVPGK
Sbjct:  233 GKGPIENLFDHVADPVANNAWAYATNFVPGK 263
[Close]
BLAST of EY706638 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.317e-23
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 3 
Query:    9 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 128
            P+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct:  175 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 214

HSP 2 Score: 48.1358 bits (113), Expect = 8.317e-23
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:  106 GRVQLRTSDDHIADPVANNA*AYATNFVPGK 198
            G+  +    DHIADPVANNA AYATNFVPGK
Sbjct:  207 GKGPIENLSDHIADPVANNAWAYATNFVPGK 237
[Close]
BLAST of EY706638 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.079e-22
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 3 
Query:    9 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 128
            PD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct:  203 PDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242

HSP 2 Score: 46.2098 bits (108), Expect = 1.079e-22
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:  106 GRVQLRTSDDHIADPVANNA*AYATNFVPGK 198
            G+  +    DH+ADPVANNA AYATNFVPGK
Sbjct:  235 GKGPIENLFDHLADPVANNAWAYATNFVPGK 265
[Close]
BLAST of EY706638 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.378e-22
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 3 
Query:    9 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 128
            P+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct:  203 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242

HSP 2 Score: 46.595 bits (109), Expect = 2.378e-22
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:  106 GRVQLRTSDDHIADPVANNA*AYATNFVPGK 198
            G+  +    DH+ADPVANNA AYATNFVPGK
Sbjct:  235 GKGPIENLFDHVADPVANNAWAYATNFVPGK 265
[Close]
BLAST of EY706638 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.021e-22
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 3 
Query:    9 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 128
            PD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct:  216 PDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 255

HSP 2 Score: 44.2838 bits (103), Expect = 4.021e-22
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 1 
Query:  106 GRVQLRTSDDHIADPVANNA*AYATNFVPGK 198
            G+  +    DH+ADPV NNA AYATNFVPGK
Sbjct:  248 GKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of EY706638 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.025e-22
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 3 
Query:    9 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 128
            P+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct:  203 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242

HSP 2 Score: 45.8246 bits (107), Expect = 4.025e-22
Identity = 21/31 (67.74%), Postives = 23/31 (74.19%), Query Frame = 1 
Query:  106 GRVQLRTSDDHIADPVANNA*AYATNFVPGK 198
            G+  +    DHI DPVANNA AYATNFVPGK
Sbjct:  235 GKGPIENLSDHINDPVANNAWAYATNFVPGK 265
[Close]
BLAST of EY706638 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.025e-22
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 3 
Query:    9 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 128
            P+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct:  202 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 241

HSP 2 Score: 45.8246 bits (107), Expect = 4.025e-22
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:  106 GRVQLRTSDDHIADPVANNA*AYATNFVPGK 198
            G+  +    DHIADPVANNA A+ATNFVPGK
Sbjct:  234 GKGPIENLADHIADPVANNAWAFATNFVPGK 264
[Close]
BLAST of EY706638 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.237e-22
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 3 
Query:    9 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 128
            PD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+NL
Sbjct:  203 PDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNL 242

HSP 2 Score: 43.8986 bits (102), Expect = 5.237e-22
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:  106 GRVQLRTSDDHIADPVANNA*AYATNFVPGK 198
            G+  ++   DH+ADPVANNA A+ATNFVPG+
Sbjct:  235 GKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265
[Close]
BLAST of EY706638 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.813e-22
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 3 
Query:    9 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 128
            P+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct:  203 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242

HSP 2 Score: 45.0542 bits (105), Expect = 6.813e-22
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:  106 GRVQLRTSDDHIADPVANNA*AYATNFVPGK 198
            G+  +    DH+ADPVANNA A+ATNFVPGK
Sbjct:  235 GKGPIENLYDHVADPVANNAWAFATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of EY706638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB23_ORYSJ4.901e-2397.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.901e-2397.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_SOLLC8.317e-2392.50Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_GOSHI1.079e-2295.00Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_TOBAC2.378e-2292.50Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB2A_PINSY4.021e-2295.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB24_SOLLC4.025e-2292.50Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_LEMGI4.025e-2292.50Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA5.237e-2295.00Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB26_PETSP6.813e-2292.50Chlorophyll a-b binding protein 37, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-059-F11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY706638 ID=EY706638; Name=EY706638; organism=Citrus sinensis; type=EST; length=400bp
CCACGCGTCCGGATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAAT
GGCCGTCTGGCTATGTTCTCCATGTTTGGATTCTTTGTTCAGGCTATTGT
CACTGGGAAGGGTCCAATTGAGAACCTCTGACGACCACATTGCTGATCCT
GTGGCCAACAATGCCTGAGCTTATGCCACTAACTTTGTTCCCGGAAAGTA
AATAAACTCATGACTTGATGGTGTCTTTTTCAGCTGTAACATTATTCTAT
GTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGGACTTATTAGTAGCT
CTGTAATGTTACCATTAGAAATGCTATGCTCCTGATCTTTTATTTCACAA
AACACAAGATTCATTCTGATATTGGACAGATGAGGTTGGCCTGAATATGC
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