EY661578

Overview
NameEY661578
Unique NameEY661578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661578 vs. ExPASy Swiss-Prot
Match: HTR12_ARATH (Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana GN=HTR12 PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 5.409e-43
Identity = 98/178 (55.06%), Postives = 117/178 (65.73%), Query Frame = 2
Query:   56 MARTKHMARRS-----------IRLQAAAVKATP---------------PTSSPGTSRQRRSEAG-EGTPT-AQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGKGQPW 505
            MARTKH   RS              QAA    TP               PT+SP T  +R ++   +  P  +Q+K  R RPGT AL+EIR FQK  +LLIP  SFIREVR+IT+ +APP +NRWT EAL+ALQEAAED+LV LF D+MLCAIHA+RVTLM+KDFELARRLGGKG+PW
Sbjct:    1 MARTKHRVTRSQPRNQTDAAGASSSQAAGPTTTPTRRGGEGGDNTQQTNPTTSPATGTRRGAKRSRQAMPRGSQKKSYRYRPGTVALKEIRHFQKQTNLLIPAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLMRKDFELARRLGGKGRPW 178          
BLAST of EY661578 vs. ExPASy Swiss-Prot
Match: CENPA_NEUCR (Histone H3-like centromeric protein cse-4 OS=Neurospora crassa GN=cse-4 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.958e-30
Identity = 69/137 (50.36%), Postives = 93/137 (67.88%), Query Frame = 2
Query:   83 RSIRLQAAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVN-RWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGG 490
            +++  +AAAV  TP  + PG  + R S    G P  Q K++R RPGT AL+EIR +Q++ DLL+ ++ F R VR I  +  P D   RW  +A++ALQEAAE FLV+LF D  LCAIHAKRVT+M+KD +LARR+ G
Sbjct:   12 KAVSKKAAAVP-TPKATPPGRRKSRASSVQPGDPVPQGKKRRYRPGTLALKEIRNYQRTTDLLVAKLPFARLVREIAMQFRPMDEEMRWQSQAILALQEAAEAFLVHLFEDTNLCAIHAKRVTIMQKDIQLARRIRG 147          
BLAST of EY661578 vs. ExPASy Swiss-Prot
Match: CENPA_CANAL (Histone H3-like centromeric protein CSE4 OS=Candida albicans GN=CSE4 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.025e-25
Identity = 68/139 (48.92%), Postives = 87/139 (62.59%), Query Frame = 2
Query:   92 RLQAAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVN-RWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGKGQPW 505
            R Q   V  T  +S P  +   R E     P   R ++R RPGTKALREIR++QKS DLLI ++ F R VR I+     P    RW   A++ALQEA+E FL++L  D  LCAIHAKRVT+M+KD +LARR+  +GQ W
Sbjct:   76 RNQPGDVVDTLASSLPRRTTTTRPEVNRTVP---RVKKRYRPGTKALREIRQYQKSTDLLIRKLPFARLVREISLDFVGPSYGLRWQSNAILALQEASESFLIHLLEDTNLCAIHAKRVTIMQKDIQLARRI--RGQSW 209          
BLAST of EY661578 vs. ExPASy Swiss-Prot
Match: H33_TETPY (Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.137e-23
Identity = 68/146 (46.58%), Postives = 91/146 (62.33%), Query Frame = 2
Query:   56 MARTKHMARRSIRLQAAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 493
            MARTK  AR+S  ++A       P     T   R+S    G     +K  + RPGT ALREIR++QK+ DLLI ++ F R VR I   +   D+ R+  +A++ALQEAAE +LV LF D  LCAIHA+RVT+M KD +LARR+ G+
Sbjct:    1 MARTKQTARKSTGVKA-------PRKQLATKAARKSAPVSG---GVKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKN-DI-RFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGE 134          
BLAST of EY661578 vs. ExPASy Swiss-Prot
Match: H33_TETTH (Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.791e-23
Identity = 68/146 (46.58%), Postives = 90/146 (61.64%), Query Frame = 2
Query:   56 MARTKHMARRSIRLQAAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 493
            MARTK  AR+S  ++A       P     T   R+S    G     +K  + RPGT ALREIR++QK+ DLLI ++ F R VR I   +   D+ R+  +A++ALQEAAE +LV LF D  LCAIHA+RVT+M KD  LARR+ G+
Sbjct:    1 MARTKQTARKSTGVKA-------PRKQLATKAARKSAPVSG---GVKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKS-DI-RFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRGE 134          
BLAST of EY661578 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 3.645e-23
Identity = 69/146 (47.26%), Postives = 86/146 (58.90%), Query Frame = 2
Query:   56 MARTKHMARRSIRLQAAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 493
            MARTK  AR+S   +A       P     T   R+S    G     +K  R RPGT ALREIRRFQKS +LL+ ++ F R VR I          R+   A++ALQEAAE ++V LF D  LCAIHAKRVT+M KD +LARR+ G+
Sbjct:    1 MARTKQTARKSTGGKA-------PRKQLATKAARKSAPASG---GVKKPHRFRPGTVALREIRRFQKSTELLVRKLPFQRLVREIAQDFKSD--LRFQSSAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134          
BLAST of EY661578 vs. ExPASy Swiss-Prot
Match: H3_EUPCR (Histone H3 OS=Euplotes crassus PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 3.645e-23
Identity = 68/146 (46.58%), Postives = 89/146 (60.96%), Query Frame = 2
Query:   56 MARTKHMARRSIRLQAAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 493
            MARTK  AR+++  +A       P    G    R++ +   T    +K  R RPGT ALREIRR+QKS +LLI ++ F R VR I          R+   A++ALQEAAE +LV+LF D  LCAIHAKRVT+M KD +LARR+ G+
Sbjct:    1 MARTKQTARKNVGGKA-------PRKHIGQKSARKTAS---TTAGMKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQEFKGD--LRFQSSAVLALQEAAEAYLVSLFEDTNLCAIHAKRVTIMPKDMQLARRIRGE 134          
BLAST of EY661578 vs. ExPASy Swiss-Prot
Match: H31_TETTH (Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.645e-23
Identity = 68/146 (46.58%), Postives = 87/146 (59.59%), Query Frame = 2
Query:   56 MARTKHMARRSIRLQAAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 493
            MARTK  AR+S   +A       P     +   R+S    G     +K  R RPGT ALREIR++QKS DLLI ++ F R VR I +        R+   A++ALQEAAE +LV LF D  LCAIHA+RVT+M KD +LARR+ G+
Sbjct:    1 MARTKQTARKSTGAKA-------PRKQLASKAARKSAPATG---GIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAE--LRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGE 134          
BLAST of EY661578 vs. ExPASy Swiss-Prot
Match: H31_TETPY (Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.645e-23
Identity = 68/146 (46.58%), Postives = 87/146 (59.59%), Query Frame = 2
Query:   56 MARTKHMARRSIRLQAAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGGK 493
            MARTK  AR+S   +A       P     +   R+S    G     +K  R RPGT ALREIR++QKS DLLI ++ F R VR I +        R+   A++ALQEAAE +LV LF D  LCAIHA+RVT+M KD +LARR+ G+
Sbjct:    1 MARTKQTARKSTGAKA-------PRKQLASKAARKSAPATG---GIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAE--LRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGE 134          
BLAST of EY661578 vs. ExPASy Swiss-Prot
Match: CENPA_SCHPO (Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe GN=cnp1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.218e-23
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 2
Query:  167 AGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAP---PDVN-RWTPEALIALQEAAEDFLVNLFGDAMLCAIHAKRVTLMKKDFELARRLGG 490
            A  G P  + +++R RPGT ALREIR++Q+S DLLI R+ F R VR I+         DV  RW   AL  LQEAAE FLV+LF D  LCAIHAKRVT+M++D +LARR+ G
Sbjct:    8 AEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119          
The following BLAST results are available for this feature:
BLAST of EY661578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
HTR12_ARATH5.409e-4355.06Histone H3-like centromeric protein HTR12 OS=Arabi... [more]
CENPA_NEUCR8.958e-3050.36Histone H3-like centromeric protein cse-4 OS=Neuro... [more]
CENPA_CANAL1.025e-2548.92Histone H3-like centromeric protein CSE4 OS=Candid... [more]
H33_TETPY2.137e-2346.58Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2[more]
H33_TETTH2.791e-2346.58Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE... [more]
H3_GRIJA3.645e-2347.26Histone H3 OS=Griffithsia japonica PE=2 SV=3[more]
H3_EUPCR3.645e-2346.58Histone H3 OS=Euplotes crassus PE=3 SV=3[more]
H31_TETTH3.645e-2346.58Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1... [more]
H31_TETPY3.645e-2346.58Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2[more]
CENPA_SCHPO6.218e-2354.46Histone H3-like centromeric protein cnp1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-034-F12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661578 ID=EY661578; Name=EY661578; organism=Citrus sinensis; type=EST; length=875bp
CCACGCGTCCGGCAGCGCATAGACGACAGAGAGAGAATCGTCTGAATTAT
TATGAATGGCGAGAACCAAACACATGGCCCGCAGAAGTATTCGACTCCAA
GCAGCAGCTGTAAAGGCCACGCCGCCGACTTCGTCACCTGGTACAAGTCG
GCAGCGAAGGAGTGAAGCGGGAGAAGGAACTCCTACTGCACAAAGGAAAC
GCCAACGCCTCAGGCCAGGAACAAAGGCACTTCGTGAGATTCGCCGGTTT
CAGAAATCTGTGGACTTGCTGATCCCCAGAATGAGCTTCATCAGAGAAGT
GAGAACCATCACTTACCGTGTTGCTCCCCCAGATGTCAATCGATGGACAC
CAGAAGCTTTAATTGCTCTGCAGGAGGCAGCAGAAGATTTTCTTGTTAAT
TTGTTTGGCGATGCAATGCTCTGTGCAATTCACGCAAAACGAGTTACTCT
AATGAAAAAGGATTTCGAATTGGCACGCCGACTAGGGGGGAAGGGACAAC
CTTGGTGAGAGAATTACAGCACCATTGATGATTTTACCTTTCAGAAAATG
GAATTCACGCTGTTATTAATTTTTTTGATCAGCAGTTCATATAGAATTGT
AAGAAGAATTAGGAATTAGGTAACCATCTCAATTCCCATGGTACTTCTGG
NTGCACCATCAAGCTTCTTCTGGTGTTGTAGCCCATCAATATCAGATTTA
TAGTTGGGAGAGATCTTATTGGTGGGATTGCAGGTTTTATCTGTAAATCG
ATTATTTTAGGTGACGATAGCAGCCAGAAGCACCTTGTTTAGCTCTAACT
AGAAGACAAGTTTGTACAACCAGATCTCTTCCTCCGGGTGGGTGTACTGG
AATTTCTTTTGCCCCTTTCCCTTAA
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