EY661539

Overview
NameEY661539
Unique NameEY661539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661539 vs. ExPASy Swiss-Prot
Match: ARR1_ARATH (Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.054e-22
Identity = 66/155 (42.58%), Postives = 86/155 (55.48%), Query Frame = 2
Query:   44 DFQTLAATGQIPAQSLATLQAAGLARSA--AKPGLPM-PLVDQRNIFSFDNQKLRFGEGQPQHMSSGK---QMNLLHGIPTTMDSK-QLVNLHHSAQSLGSLNMQASAHGNPSGQSSPLLMQMAQPQSRGQILTETSGGQVPRLPTSXWHPILSN 487
            D Q LA TGQ+PAQSLA LQAAGL R A  +K GLP+  +VD+R+IFSFDN K RFGEG   H    +   QMNLLHG+PT +  +  + N     Q + ++    S   N  G   PL  Q + P+    +LT +         +S   P+LSN
Sbjct:  327 DLQALAVTGQLPAQSLAQLQAAGLGRPAMVSKSGLPVSSIVDERSIFSFDNTKTRFGEGLGHHGQQPQQQPQMNLLHGVPTGLQQQLPMGNRMSIQQQIAAVRAGNSVQNN--GMLMPLAGQQSLPRGPPPMLTSSQ--------SSIRQPMLSN 471          

HSP 2 Score: 31.187 bits (69), Expect = 3.054e-22
Identity = 17/38 (44.74%), Postives = 22/38 (57.89%), Query Frame = 1
Query:  541 TGYNSVSQTSSVLNFP*NTRQ-KLPGNSFPLGKTPGIS 651
            T Y +++   S  + P N  Q +LP NSFPL   PGIS
Sbjct:  494 TSYTNLTTQHSSSSMPYNNFQPELPVNSFPLASAPGIS 531          
BLAST of EY661539 vs. ExPASy Swiss-Prot
Match: ARR2_ARATH (Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.672e-20
Identity = 70/164 (42.68%), Postives = 92/164 (56.10%), Query Frame = 2
Query:   44 DFQTLAATGQIPAQSLATLQAAGLAR-SAAKPGLPM-PLVDQRNIFSFDNQKLRFGEGQPQHMSSGKQMNLLHGIPTTMDSKQLVNLHHSAQSLGSLNMQASAHGNPSGQSSPLLMQMAQPQSRGQILTETSGGQVPRLPTSXWHPILSNGAAGAMLXRNGIGE 529
            D Q+LA TGQ+P QSLA LQAAGL R + AKPG+ + PLVDQR+IF+F+N K+RFG+G  Q M++G   NLLHG+PT                 GS +M+     N   QSS +++ +A    RG      S GQ P L +S       +   GA+  RN I E
Sbjct:  306 DLQSLAVTGQLPPQSLAQLQAAGLGRPTLAKPGMSVSPLVDQRSIFNFENPKIRFGDGHGQTMNNG---NLLHGVPT-----------------GS-HMRLRPGQNV--QSSGMMLPVADQLPRGGPSMLPSLGQQPILSSSVSR---RSDLTGALAVRNSIPE 443          

HSP 2 Score: 27.335 bits (59), Expect = 2.672e-20
Identity = 16/33 (48.48%), Postives = 18/33 (54.55%), Query Frame = 1
Query:  565 TSSVLNFP*NTRQKLPGNSFPLGKTPGISAGMS 663
            T SV N   N    LP +SFPL   PGIS  +S
Sbjct:  452 THSVFN---NFPADLPRSSFPLASAPGISVPVS 481          
The following BLAST results are available for this feature:
BLAST of EY661539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ARR1_ARATH3.054e-2242.58Two-component response regulator ARR1 OS=Arabidops... [more]
ARR2_ARATH2.672e-2042.68Two-component response regulator ARR2 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-034-C05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661539 ID=EY661539; Name=EY661539; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGCTTATGGTTCCCTGTCTTCGCTTAGTGGGCTTGACTTTC
AAACTCTTGCTGCCACTGGTCAAATTCCAGCTCAAAGTCTCGCCACACTT
CAAGCAGCAGGACTTGCAAGGTCAGCTGCAAAGCCTGGGTTACCAATGCC
TCTTGTTGATCAAAGGAACATTTTTAGCTTTGATAATCAGAAGTTAAGAT
TTGGAGAAGGGCAACCACAACATATGAGCAGTGGCAAACAAATGAACTTA
CTACATGGAATTCCAACAACCATGGATTCGAAACAACTTGTCAATTTGCA
CCATTCTGCTCAATCCCTCGGCAGCTTGAACATGCAAGCCAGTGCCCATG
GAAACCCAAGTGGCCAGAGTAGCCCTTTACTCATGCAAATGGCTCAACCG
CAATCACGAGGGCAGATACTAACTGAAACTAGTGGAGGTCAAGTTCCCAG
GCTTCCAACATCTNNGTGGCATCCTATACTATCAAATGGGGCTGCTGGTG
CAATGTTANCAAGAAATGGGATTGGTGAAATAGTAGAGGGACAGGGTACA
ATTCAGTTTCTCAAACATCTTCAGTGTTAAATTTCCCTTAAAACACTCGG
CAGAAATTGCCAGGAAATAGTTTCCCCCTAGGAAAGACCCCGGGAATATC
CGCAGGGATGTCCACTCTCCAACTAAAGGGGGATTTCAAGAAGAAATCAC
CTCNACATTAAGGGATCTGGGAGATTTATGCCAAATTAAGATTTTTTTAT
GATTTGCAACACCACAAACCCCACAACTGGAAACTGCAAAGTGGGGCTTC
CCCTTTGAAGCTTCCAAAATCAAACTCCTGGAAGGCAAGGTGAGGAAACC
CTTCGTTTAATAAACAAAGAATCCTTCCCCCAGGGAGTACAAAATAAAGG
GTTCCCCAGGGGAGCCC
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