EY661122

Overview
NameEY661122
Unique NameEY661122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.886e-70
Identity = 127/144 (88.19%), Postives = 130/144 (90.28%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDDGHHRHEY 437
            R GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINY PPTVVPGGDLAKVQRAVCMISNST  AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V A+S EG++G    EY
Sbjct:  308 RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGEGEEGDEGEEY 451          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 9.360e-70
Identity = 125/138 (90.58%), Postives = 129/138 (93.48%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDDG 419
            R GKYMACCLMYRGDVVPKDVNAAVA+IKTKRTIQFVDWCPTGFKCGINY PPTVVPGGDLAKVQRAVCMISNST  AEVFSRIDHKFDLMYAKRAF+HWYVGEGMEEG FSE REDLAALE DYE V A+SAEGD+G
Sbjct:  308 RHGKYMACCLMYRGDVVPKDVNAAVASIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGDEG 445          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.223e-69
Identity = 126/137 (91.97%), Postives = 128/137 (93.43%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDD 416
            R GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINY PPTVVPGGDLAKVQRAVCMISNST  AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V A+SAEG+D
Sbjct:  308 RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGED 444          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.223e-69
Identity = 127/144 (88.19%), Postives = 128/144 (88.89%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDDGHHRHEY 437
            R GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQF DWCPTGFKCGINY PPTVVPGGDLAKVQRAVCMISNST  AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V A SAEGD+     EY
Sbjct:  308 RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFADWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSAEGDEEDEGDEY 451          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.085e-69
Identity = 125/138 (90.58%), Postives = 127/138 (92.03%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDDG 419
            R GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINY PPTVVPGGDLAKVQRAVCMISNST  AEVFSRIDHKFDLMY KRAFVHWYVGEGMEEG FSE REDLAALE DYE V A+S EGD+G
Sbjct:  308 RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYTKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGEGDEG 445          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA1_PEA (Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.085e-69
Identity = 128/145 (88.28%), Postives = 130/145 (89.66%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEG-DDGHHRHEY 437
            R GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINY PPTVVPGGDLAKVQRAVCMISNST  AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V A+S +G DDG    EY
Sbjct:  308 RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGDGDDDGLGEEEY 452          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.557e-69
Identity = 126/144 (87.50%), Postives = 128/144 (88.89%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDDGHHRHEY 437
            R GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINY PPTVVPGGDLAKVQRAVCMISNST  AEVFSR+DHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V A+SAE D      EY
Sbjct:  308 RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEADGEDEGEEY 451          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 6.067e-69
Identity = 125/144 (86.81%), Postives = 128/144 (88.89%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDDGHHRHEY 437
            R GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINY PP+VVPGGDLAKVQRAVCMISNST   EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V A+  EG+DG    EY
Sbjct:  308 RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEFDEGEDGDEGDEY 451          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA1_MAIZE (Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 6.067e-69
Identity = 125/144 (86.81%), Postives = 128/144 (88.89%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDDGHHRHEY 437
            R GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINY PP+VVPGGDLAKVQRAVCMISNST   EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V A+  EG+DG    EY
Sbjct:  308 RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEFDEGEDGDEGDEY 451          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA_WHEAT (Tubulin alpha chain OS=Triticum aestivum GN=TUBA PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.352e-68
Identity = 125/144 (86.81%), Postives = 127/144 (88.19%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDDGHHRHEY 437
            R GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINY PP VVPGGDLAKVQRAVCMISNST   EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V A+  EG+DG    EY
Sbjct:  308 RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPGVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEFDEGEDGDEGDEY 451          
The following BLAST results are available for this feature:
BLAST of EY661122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBA1_ANEPH1.886e-7088.19Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]
TBA2_GOSHI9.360e-7090.58Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA_PRUDU1.223e-6991.97Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]
TBA1_GOSHI1.223e-6988.19Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA4_GOSHI2.085e-6990.58Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA1_PEA2.085e-6988.28Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE... [more]
TBA_CHLVU3.557e-6987.50Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ... [more]
TBA3_HORVU6.067e-6986.81Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ... [more]
TBA1_MAIZE6.067e-6986.81Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV... [more]
TBA_WHEAT1.352e-6886.81Tubulin alpha chain OS=Triticum aestivum GN=TUBA P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-029-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661122 ID=EY661122; Name=EY661122; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGGGCAAGTATATGGCCTGCTGTTTGATGTATCGTGGTGAT
GTTGTGCCTAAGGATGTGAATGCAGCTGTGGCCACCATCAAGACCAAGCG
CACAATTCAGTTTGTTGACTGGTGCCCTACTGGATTCAAGTGTGGTATCA
ACTATCATCCACCAACTGTGGTCCCTGGCGGTGACCTTGCCAAGGTGCAG
AGGGCTGTCTGCATGATTTCCAACTCCACCATCGGTGCTGAAGTGTTTTC
TCGCATTGATCACAAGTTTGACCTAATGTATGCCAAGCGTGCTTTTGTGC
ACTGGTATGTTGGTGAGGGAATGGAGGAAGGACATTTCTCTGAGGACCGG
GAGGATCTTGCTGCCCTGGAGAACGATTATGAAAACGTTAGTGCACAATC
TGCTGAGGGGGACGATGGACACCATCGACATGAGTATTAATTGTGTTTGT
GCACTGATAACGGATGAGCCATCTTTCCTTTCTTATGTTGTTCTGGATGA
TGTTGTCCAATAATGTTGGGGGAGCTCTATGTGCCTGTGCACTGACATTG
TAATTGATTTCTTAAGACTTGGTTGATTATGGTATCGGTAACCGTGATCC
ATGGGTCTTGCTTATAAAATTGCTATTGGCATCAACCCAATTATGATGAT
TGCCGGAAAATTGTAAAGAGGCAATGCTCGGAGAACCCGTTAATTTGATC
AGGCAGAGGTACCGTGGGGGCGCTGACATTATCATCAAGGAAAAAAGCGC
TGGCTCATGATTCATGACCTTTATGCAAGAGCTGGTCTAATGGGTGGCAC
CGCCCAATTTTTGATAACACCAAATGGGTAACCCCTCACTCTCCACATTG
ATGATAACCAAGTAGTTCCAACTTCCTGGATTGACCAAAAGGAGAAAACC
CCACCC
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