EY661048

Overview
NameEY661048
Unique NameEY661048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY661048 vs. ExPASy Swiss-Prot
Match: Y4115_ARATH (Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.691e-39
Identity = 94/169 (55.62%), Postives = 116/169 (68.64%), Query Frame = 1 
Query:   28 VSMAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLXXXXXXXXXXXX-IKQVSES--RRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVXXXXXXXXXXXXXYTGWFVYRYLLFKSSR*ELATDIEALKKKIAGTE 525
            +S+AA++  AV+ PRVP+ +T       C A+P L             +K VS +  ++  LL+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV             YTGWFVYRYLLFKSSR ELA DIE+LKKKIAG+E
Sbjct:    3 ISVAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELLKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164
The following BLAST results are available for this feature:
BLAST of EY661048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4115_ARATH3.691e-3955.62Uncharacterized protein At4g01150, chloroplastic O... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661048 ID=EY661048; Name=EY661048; organism=Citrus sinensis; type=EST; length=883bp
CCACGCGTCCGACACCACAAATCAAAAGTATCAATGGCAGCGACGGCGTA
CGCGGCGGTGTTAACTCCACGTGTCCCCTCAACCACCACCGTCAAAGTCA
AATCTTCTCACTGCTTTGCTCTTCCCTGCCTCCCTCCTCGTTCGTCAACG
TCACCATTCTCTTCTTCCATTAAACAAGTTTCAGAGTCGAGAAGGTTTCC
TTTGCTTCAGGTTAGAGCCTCTTCCTCAGAAGAGACATCCACAGTTGATG
CAGATGAACTTTTTTCAGACTTGAAGGAAAAGTGGGATGCCGTTGAAAAC
AAGTCCACGGTACTTCTCTATGGAGGTGGGGCAATAGTGGCTGTTTGGTT
ATCCTCAACTATTGTTGGTGCCATCAATTCAGTGCCTTTGCTTCCCAAAC
TCTTGGAGTTGATTGGACTTGGTTATACTGGATGGTTTGTCTACAGATAC
CTTCTCTTCAAGTCAAGCAGATAAGAACTAGCCACGGATATTGAAGCACT
GAAAAAGAAGATTGCTGGAACTGAATAGATTGTACATTCTGGAGGCAATT
CATGTCTTGCCCTGATAGTCATTTATTTTGGTCCTCTATCATTGCATATG
AGGCAACTGTATCCTGTAGAGTAGGGTGCGTACGGATTCGTTTTATCCCT
GTATTTTCCAGGATATCCCTGGAAAAAAAATTTGACAAAGTATTGTGAAT
GCCAGCCATAATGCTTCTGGGGTTAAAACAGAAAAAAATTCACTTTTCCA
GAAAAAAAAAAAAAAGGCGGCCCCTCTAAAGGACCAAAGTTAAGAACCCG
TGGTGCGAATCATAATTCTTTTAAAAGCACCAAAATTAATTCCTGGCGCC
GNTTTCAACCTCTTAACTGTAAAAACCGTGCGT
back to top