EY661004

Overview
NameEY661004
Unique NameEY661004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 1.291e-92
Identity = 179/253 (70.75%), Postives = 200/253 (79.05%), Query Frame = 2
Query:  101 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SP-GPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENLWTP-*NPVATMLGP-CYQFVPGS 847
            ++ATPFLGQ++  AN L+DVV MG+A++TM N+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCI PEVLEKW++VDFKEPVWFKAG+QIFS+GGLDYLGNPNLVHAQSILAVL F VVLMGLVEGFRING PGVGEG  LY    +  P G ADDP T AE +VKEI+      FS     + +    K PLENL     NPVA        +FVPG+
Sbjct:   14 VKATPFLGQTKN-ANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGA 265          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.806e-86
Identity = 165/230 (71.74%), Postives = 183/230 (79.57%), Query Frame = 2
Query:  110 TPFL-GQSRT-TANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SP-GPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENLW 787
            TPFL GQ R  +A+ L+D+    N + TMGN+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+ PEVL+KW+ V+FKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVL F V+LMGLVEGFRING  GVGEG  LY    +  P G ADDPVT AE +VKEI+      FS     + +    K PLENL+
Sbjct:   17 TPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLF 246          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.114e-65
Identity = 137/236 (58.05%), Postives = 158/236 (66.95%), Query Frame = 2
Query:  104 RATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENLW 787
            + T FLG +      ++ V      + M     +    +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+    VVLMG VEG+R+ G P +GEG   +Y    F   G ADDP T AE +VKE++      FS     + +    K P+ENL+
Sbjct:    8 QTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-LGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLF 241          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.114e-65
Identity = 137/236 (58.05%), Postives = 158/236 (66.95%), Query Frame = 2
Query:  104 RATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENLW 787
            + T FLG +      ++ V      + M     +    +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+    VVLMG VEG+R+ G P +GEG   +Y    F   G ADDP T AE +VKE++      FS     + +    K P+ENL+
Sbjct:    8 QTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-LGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLF 241          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.645e-64
Identity = 144/261 (55.17%), Postives = 168/261 (64.37%), Query Frame = 2
Query:  101 LRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENLWTP*N-PVA-TMLGPCYQFVPG 844
            ++ + F+GQ+  ++    ++ V   G  + TM          +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+    VVLMG VEG+R+ G P +GEG   +Y    F   G ADDP   AE +VKEI+      FS     + +    K P+ENL    N PVA         FVPG
Sbjct:    6 IQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP-LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPG 264          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.149e-63
Identity = 129/198 (65.15%), Postives = 145/198 (73.23%), Query Frame = 2
Query:  200 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENLW 787
            +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILAV    VVLMGL+EG+R+ G P +GEG   +Y    F   G ADDP   AE +VKEI+      FS     + +    K P+ENL+
Sbjct:   48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP-LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLF 243          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.149e-63
Identity = 130/197 (65.99%), Postives = 144/197 (73.10%), Query Frame = 2
Query:  200 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            +WYG DR K+LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCI PE+L K   V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+    VVLMGL+EG+R+ G P +GEG   LY    F   G ADDP   AE +VKEI+      FS     + +    K P+ENL
Sbjct:   47 IWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSK-NGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGP-LGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 241          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.149e-63
Identity = 131/215 (60.93%), Postives = 151/215 (70.23%), Query Frame = 2
Query:  170 GNAKYTMGN-------ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENLW 787
            G A++TM          +WYGPDR KYLGPFS Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC  PE+LEK   V F E VWFKAG+QIF+EGGLDYLGNPNL+HAQSILA+    VVLMG VEG+R+ G P +GEG   LY    F   G ADDP + AE +VKE++      FS     + +    K P++NL+
Sbjct:   31 GQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK-NGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP-LGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLY 243          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.806e-63
Identity = 134/240 (55.83%), Postives = 160/240 (66.67%), Query Frame = 2
Query:  101 LRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENLW 787
            ++ + F GQ+  ++    ++ +   G  + TM          +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+    VVLMG VEG+R+ G P +GEG   +Y    F   G ADDP   AE +VKEI+      FS     + +    K P+ENL+
Sbjct:    6 IQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGP-LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLY 243          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 8.165e-63
Identity = 128/197 (64.97%), Postives = 143/197 (72.59%), Query Frame = 2
Query:  200 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+    VVLMG VEG+R+ G P +GEG   +Y    F   G ADDP   AE +VKEI+      FS     + +    K P+ENL
Sbjct:   20 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP-LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 214          
The following BLAST results are available for this feature:
BLAST of EY661004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB23_SOLLC1.291e-9270.75Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.806e-8671.74Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_ORYSJ5.114e-6558.05Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI5.114e-6558.05Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC9.645e-6455.17Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC2.149e-6365.15Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_LEMGI2.149e-6365.99Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA2.149e-6360.93Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB26_PETSP2.806e-6355.83Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC8.165e-6364.97Chlorophyll a-b binding protein 5, chloroplastic (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661004 ID=EY661004; Name=EY661004; organism=Citrus sinensis; type=EST; length=885bp
CCACGCGTCCGCAGTTCCAACCGACACAACATCCATAATAACAACTCTCA
GGACAATGGCATCAATAATGGCGGCTGCTACTGCTAGCTCTAGCACTTCT
CTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAACTGCTAACGCTCT
AAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACAATGGGAAATGAAC
TGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACCCTTTTCAGCACAG
ACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACTATGGATGGGACAC
TGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTG
AGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTAGGCTGCATCACC
CCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAAGGAACCGGTTTG
GTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACTACTTGG
GAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCTGTCCTGAGATTC
CCAGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTATCAATGGCCCTCC
TGGTGTCGGAGAGGGAACGACCCTCTACCTGGTGGCAATATTTTGATCCC
CTGGGCCTGCTGATGATCCTGTTACGTTNGCTGAAACTCAGGTGAAGGAA
ATCAGAATGGCAGGCTAGCTATNGTTTTCATGTTTGGTTTCTTTGCCCAG
CTATTGTGACAGGAAAAGTCCCTTGGAGAACCTCTGGACACCTTGAAACC
CTGTTGCCACAATGCTGGGTCCATGCTACCAGTTTGTACCTGGATCAAAA
CCCATATGAATACGGGAATTCTTGTCAGGGGAAGG
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