EY660760

Overview
NameEY660760
Unique NameEY660760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660760 vs. ExPASy Swiss-Prot
Match: PP418_ARATH (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 5.178e-52
Identity = 88/143 (61.54%), Postives = 113/143 (79.02%), Query Frame = 2
Query:  323 MGVKTM-FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEIS*SLRLGF 748
            MG K M FKWS  IT +QV++L+RAEKDV K++ +FDSATAEYANG+ HD S+F  M+ +LVSAN+F+ AEDL+ R+  E C ++EDI LSICRGYGRVHRP D++RVF KMK+F C+P+ K+Y+TVLAILVEE   +L   F
Sbjct:    1 MGSKVMMFKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKF 143          

HSP 2 Score: 35.8094 bits (81), Expect = 5.178e-52
Identity = 19/37 (51.35%), Postives = 23/37 (62.16%), Query Frame = 1
Query:  721 DQLKLAFRFYRHMREIWYSPCXASPLCLIKLYVRTVG 831
            +QL LAF+FY++MREI   P  AS   LIK   R  G
Sbjct:  135 NQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDG 171          

HSP 3 Score: 29.261 bits (64), Expect = 5.178e-52
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  807 QALCKNSGTMDAAFKIFV 860
            +ALC+N GT+DA  KIF+
Sbjct:  164 KALCRNDGTVDAGLKIFL 181          
BLAST of EY660760 vs. ExPASy Swiss-Prot
Match: PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = 2
Query:  338 MFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILVE 718
            M  +   ++   VL+L+++EK+   A  +FDSAT     G+ H    +  ++ +L           +++ +  ++C   ED+ LS+ + YG+   P  A+ VF +M+E FGCEP  +SY T+L   VE
Sbjct:    1 MVVFPKSLSPKHVLKLLKSEKNPRAAFALFDSATRH--PGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVE 126          
The following BLAST results are available for this feature:
BLAST of EY660760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP418_ARATH5.178e-5261.54Pentatricopeptide repeat-containing protein At5g46... [more]
PP221_ARATH3.954e-1230.47Pentatricopeptide repeat-containing protein At3g09... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-025-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660760 ID=EY660760; Name=EY660760; organism=Citrus sinensis; type=EST; length=899bp
CCACGCGTCCGCGGACGCGTGGGCGCGGGGTTTCAAATCCGTTATTATTA
TATTATTCTACAGTCTACACTCTCCTTCACTTGGCTCTTTCTTAGCATCA
GTTTCTGCGGCTAACATAAAGATTGAATAGATGTACTTCCTTTCCTTGTC
TCAGCTGTTGCCATTTTGTTGAGCTACTCCTTTCTTTCCGCTCCTTAGAA
CCTCTGCCAATTTGGTGCACACTAGTCGTTCGATAGAATGCGTAAAGGAA
GTTTACGAGGGGTTGTTAATTTTTGTGGATCAAGTTTTTGCTTTTAATCG
ATTCTCAACTTCGTTTGCGGTAATGGGTGTGAAGACTATGTTCAAATGGT
CCACAAAGATCACGTCTGCCCAAGTATTGCAGCTGATACGAGCTGAAAAG
GATGTAAACAAGGCCCTTGTGATATTTGACTCAGCGACAGCCGAGTATGC
TAATGGTTTTAGGCATGATAACTCCACGTTTTCTCTCATGATCTCCAAAT
TAGTATCTGCTAACCAGTTTAGGCCAGCCGAGGATCTCCTTGATAGAGTG
AACAAGGAAAAATGTGATATCACAGAAGATATATTCCTCTCCATTTGTAG
AGGCTACGGCCGTGTTCATAGACCGTTGGATGCCATGAGGGTTTTTGATA
AAATGAAGGAATTTGGCTGTGAACCTACCCCCAAGTCTTACATTACAGTG
CTTGCAATTCTCGTTGAGGAGATCAGTTAAAGCTTGCGTTTAGGTTTTAT
AGGCATATGAGAGAAATTTGGTATTCACCTTGTNGTGCTTCCCCNTTATG
TTTGATCAAGCTCTATGTAAGAACAGTGGGACGATGGACGCTGCTTTTAA
GATATTCGTGAGATGCCAATCGTGGGTGCACTCAGATCCTATACTATGG
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