EY660746

Overview
NameEY660746
Unique NameEY660746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660746 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.280e-32
Identity = 87/187 (46.52%), Postives = 103/187 (55.08%), Query Frame = 2
Query:   14 EACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG---GSPTPTSDDVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXXEE-------SAMKLQQSDLDLRLTPRFTGK--VPPEVRRRPGTPSMNSEESGTTT-----CFESGLTDHRYLNGAEERKLLNLFV 523
            EACGRTVNPVNGA+G+LWTGNW++CQAAVETVLRGG+LRP+PELL   G   G P+PTS++ SE    CT+M  LQ                                   S+     S+LDL L P F  K   P   RRR  TPSMNSE+SGTTT     C +  +  +    G E  KLLNLFV
Sbjct:   70 EACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEEASE---ICTEMLNLQQNDSTDRNIYHHSRFSSSRSRSTMDSSSPTKRKRLSSEDQPSSELDLSLIPNFPIKQATPSSTRRRSVTPSMNSEDSGTTTTTTAFCDKGDVYGN---GGGETTKLLNLFV 250          
BLAST of EY660746 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.455e-30
Identity = 84/183 (45.90%), Postives = 100/183 (54.64%), Query Frame = 2
Query:   14 EACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG--GSPTPTSDDVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXXEE-------SAMKLQQSDLDLRLTPRFTGKVPPEVRRRPGTPSMNSEESGTTTCFESGLTDHRYL-----NGAEERKLLNLF 520
            EACGRTVNPVNGAVGLLWTGNW+VCQAAVETVLRGG+L+P+PELLN  G  G P+PTSD+ SE    CT+M  L+                                   S+ +   S+LDL L P +  K  P    +  TPSM SEES TT  F++     RY+      G    KLLNLF
Sbjct:   70 EACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASE---ICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQQPSSELDLSLIPIYPIKTLP---FKEDTPSMYSEESVTTVSFQNNNAGDRYVRCGGGGGGATTKLLNLF 246          
BLAST of EY660746 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.052e-24
Identity = 76/178 (42.70%), Postives = 95/178 (53.37%), Query Frame = 2
Query:   14 EACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGSPTPTSDDVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXXEESAMKLQQSD-LDLRLTPRFTGKVPPEV------RRRPGTPSMNSEESGTTTCFESGLT-DHRYLNGAEERKLLNLFV 523
            EACGRTVNPVNGAVG+LWT NWHVCQAAVETVLRGGTLRP+ +LL S    P+        +E+   D+SR Q                           +S + LQ +  L L         +PP          RPG+PS   EES TT+C+E+G+  D++      E+KLLNLFV
Sbjct:   70 EACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLES----PSLMISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLTAPAVPVPFLPPSSFCKVVKGDRPGSPS---EESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV 240          
BLAST of EY660746 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.035e-11
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 2
Query:   14 EACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPV 136
            EACGR VNP+ G+VGLLW+GNWH+CQAAVE V+RG  + P+
Sbjct:   72 EACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPI 112          
The following BLAST results are available for this feature:
BLAST of EY660746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LBD37_ARATH5.280e-3246.52LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD38_ARATH6.455e-3045.90LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD39_ARATH4.052e-2442.70LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD40_ARATH1.035e-1168.29LOB domain-containing protein 40 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-025-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660746 ID=EY660746; Name=EY660746; organism=Citrus sinensis; type=EST; length=838bp
CCACGCGTCCGACGAAGCCTGTGGCCGAACTGTGAATCCTGTGAATGGAG
CTGTAGGTCTTTTGTGGACGGGGAACTGGCATGTTTGCCAGGCTGCCGTG
GAAACTGTCCTCCGAGGCGGCACGTTGCGTCCGGTGCCGGAGCTTCTCAA
CAGCTGCGGCGGATCGCCAACACCAACTTCCGACGATGTATCGGAAGCTG
AAGTGACTTGCACGGACATGTCTAGGTTGCAAGATCGGTCGTTTCCAAGT
TCTCATTGTAGATTCTCGAGTTCAAGATCCAAGGTGTCACCAGCTAAACG
TAAGAGAGTGGAAGAATCAGCAATGAAATTGCAACAGTCAGATCTGGATC
TTCGCTTGACGCCAAGGTTTACGGGCAAGGTTCCGCCGGAAGTCAGGCGG
CGACCTGGTACTCCGTCGATGAATTCGGAGGAATCAGGCACCACTACGTG
CTTCGAAAGTGGGTTAACAGATCATCGATATCTCAATGGAGCTGAGGAGA
GGAAATTACTCAACTTGTTCGTTTGAGCAAATATTATCCTTAATTAGTTT
CTTCCACTTTTAACTCTGTGAATTTATGTTCACGAAGAAGAGTTGTACTA
TTATCCTTAGTTTTTGGTTTACTTTTGAGAGAATTTTCCCGGAAACTGAT
TCCGGCGAGTTTTTGTATAATTACCGTCAGAGGATTTCTCTCTTTGATTT
ATCCAAACGGGAAGAGAGGAAGGTGAATTTGTCGGTGATGACTCTCTTTT
TCCTTTCTTTTCTTTTCTTTTTTTATAAAATTTTATTATGTGGNTTAGTA
TGTGTATGACATGAATAAATGAAATTATTGCCGATTAA
back to top