EY660743

Overview
NameEY660743
Unique NameEY660743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660743 vs. ExPASy Swiss-Prot
Match: DOM3Z_ARATH (Protein Dom3z homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g17620 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 2.119e-100
Identity = 144/198 (72.73%), Postives = 170/198 (85.86%), Query Frame = 1
Query:   55 FSNGRQDERFVSEFRLSRSEETLSRKVVAFQEPCELAQYSRVEGGDVYFDDRSLRLFKRLISEDVGADLNEGFDTFIEKKELGSEGFGDLLSCIRNRNIPLQNMHFVTFRNNLNKILATAYIRNEPWAMGVHKRNGVVYLDVHKVQERPKSELDRRRCYWGYCFESLATEDPRRADGEXIHHIDANVEFCAVMKTN*G 648
            + N ++DERFVSE +LS+S+ETL+RK   FQEPCEL  YSRVEGG+V +DD+ LRLFKR I E++GADLN+G+DTFIEKK+LGSEGFGDLL  IR +NI L N+HFVTFRNNLNKIL  AY R+EPW MGVHKRNG +YLDVHK+ ERP+S+LDRRRCYWGYCFESLATEDP RA GE IHH+DANVEFC+V++T  G
Sbjct:  188 YQNYQRDERFVSELKLSKSKETLARKQTNFQEPCELTCYSRVEGGEVIYDDQGLRLFKRHIGEEIGADLNQGYDTFIEKKDLGSEGFGDLLGSIRAKNISLDNIHFVTFRNNLNKILGAAYNRHEPWEMGVHKRNGTIYLDVHKLPERPQSDLDRRRCYWGYCFESLATEDPGRAYGEEIHHVDANVEFCSVVRTKLG 385          

HSP 2 Score: 75.0998 bits (183), Expect = 2.119e-100
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 3
Query:  639 KLGAHRLLMGAEMDCCDSTDDGRRFYVEFKTSRELDYHTEERFEKRNCSSF 791
            KLGAHR++MGAEMDCCD +D G+RFYVE KT+RELD  T +RFE+     F
Sbjct:  383 KLGAHRVMMGAEMDCCDVSDKGKRFYVELKTTRELDDRTVDRFEREKLLKF 433          

HSP 3 Score: 24.2534 bits (51), Expect = 2.119e-100
Identity = 15/29 (51.72%), Postives = 15/29 (51.72%), Query Frame = 2
Query:  773 EKLLKFWINLSWLGFIY-RC*FXDDASRL 856
            EKLLKFWI     G  Y    F DD  RL
Sbjct:  428 EKLLKFWIQSFVAGVPYIVVGFRDDGGRL 456          
BLAST of EY660743 vs. ExPASy Swiss-Prot
Match: DOM3Z_HUMAN (Protein Dom3Z OS=Homo sapiens GN=DOM3Z PE=1 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 7.294e-11
Identity = 47/183 (25.68%), Postives = 76/183 (41.53%), Query Frame = 1
Query:  142 FQEPCELAQYSRVEGGDVYFDDRSLRLFKRLISEDVGA--DLNEGF-DTFIEKKELGSEGFGDLLSCIRNRNIPLQN------MHFVTFRNNLNKILATAYIRNEPWAMGVHKRNGVVYLDV-----HKVQERPKSELDRRRCYWGYCFESLATEDPRRADGEXIHHIDANVEFCAVMKTN*G 648
            ++ P EL  +S       + D R+LR +    +   G   DL +G+ D +  + E   E    LL  +      L+          VT+R +L K+L T Y R E W +   +  G +YL        + Q   +  L R   Y GY FE     D   +  +    ++ NV FC+V+++  G
Sbjct:   43 YRRPSELGCFSLDAQRQYHGDARALRYYSPPPTNGPGPNFDLRDGYPDRYQPRDEEVQERLDHLLCWLLEHRGRLEGGPGWLAEAIVTWRGHLTKLLTTPYERQEGWQLAASRFQGTLYLSEVETPNARAQRLARPPLLRELMYMGYKFEQYMCADKPGSSPDPSGEVNTNVAFCSVLRSRLG 225          

HSP 2 Score: 32.3426 bits (72), Expect = 7.294e-11
Identity = 16/39 (41.03%), Postives = 23/39 (58.97%), Query Frame = 3
Query:  636 NKLGAHRLLMGAEMDCCDSTDDGRR---FYVEFKTSREL 743
            ++LG+H LL   E+DC D      +    YVE KTS+E+
Sbjct:  222 SRLGSHPLLFSGEVDCTDPQAPSTQPPTCYVELKTSKEM 260          
BLAST of EY660743 vs. ExPASy Swiss-Prot
Match: DOM3Z_BOVIN (Protein Dom3Z OS=Bos taurus GN=DOM3Z PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 9.467e-11
Identity = 47/183 (25.68%), Postives = 75/183 (40.98%), Query Frame = 1
Query:  142 FQEPCELAQYSRVEGGDVYFDDRSLRLFKR--LISEDVGADLNEGF-DTFIEKKELGSEGFGDLLSCIRNRNIPLQNMH------FVTFRNNLNKILATAYIRNEPWAMGVHKRNGVVYLD-----VHKVQERPKSELDRRRCYWGYCFESLATEDPRRADGEXIHHIDANVEFCAVMKTN*G 648
            ++ P EL  +S       + D R+LR +       +    DL +G+ D +  + E   E    LL  +      L+          VT+R +L K+L T Y R E W +   +  G +YL        +VQ   +  L R   Y GY FE     D      +    ++ NV FC+V+++  G
Sbjct:   43 YRRPSELGCFSLDAQRQYHGDARALRYYSPPPTNGQSPNFDLRDGYPDRYQPRDEEVQERLDHLLRWLLEHRGQLEGGPGWLAGAIVTWRGHLTKLLTTPYERQEGWQLAASRFRGTLYLSEVETPAARVQRLTRPPLLRELMYMGYKFEQYMCADKPGVSPDPSGEVNTNVAFCSVLRSRLG 225          

HSP 2 Score: 31.187 bits (69), Expect = 9.467e-11
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 3
Query:  636 NKLGAHRLLMGAEMDCCDSTDDGRR---FYVEFKTSREL 743
            ++LG H LL   E+DC D      +    YVE KTS+E+
Sbjct:  222 SRLGNHPLLFSGEVDCTDPQAPSTQPPTCYVELKTSKEM 260          
The following BLAST results are available for this feature:
BLAST of EY660743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DOM3Z_ARATH2.119e-10072.73Protein Dom3z homolog, chloroplastic OS=Arabidopsi... [more]
DOM3Z_HUMAN7.294e-1125.68Protein Dom3Z OS=Homo sapiens GN=DOM3Z PE=1 SV=2[more]
DOM3Z_BOVIN9.467e-1125.68Protein Dom3Z OS=Bos taurus GN=DOM3Z PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-025-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660743 ID=EY660743; Name=EY660743; organism=Citrus sinensis; type=EST; length=859bp
CCACGCGTCCGTGGATATCCTCCAAGGCAGGGAGGTTATGGCCGTGGCTC
AAGATTCTCAAATGGTCGCCAGGATGAACGATTTGTTTCTGAATTTAGGC
TTTCAAGGAGTGAAGAAACTTTGTCTAGAAAAGTTGTTGCTTTTCAAGAG
CCATGTGAGCTTGCACAATATAGTCGAGTAGAAGGTGGTGATGTCTACTT
CGATGATCGCAGCTTGAGGCTTTTCAAACGTCTCATTTCTGAGGATGTTG
GAGCTGATCTAAATGAAGGTTTTGATACTTTTATTGAGAAAAAAGAGTTG
GGCTCTGAGGGATTTGGCGACTTGCTTTCTTGCATAAGAAACAGAAATAT
CCCGCTTCAGAACATGCATTTTGTGACTTTCCGTAACAATCTTAACAAGA
TACTAGCTACTGCTTATATCCGAAATGAGCCTTGGGCAATGGGAGTCCAT
AAAAGGAATGGGGTCGTCTATCTTGATGTGCACAAAGTACAAGAAAGGCC
AAAAAGTGAGTTGGATCGCCGAAGATGTTACTGGGGTTATTGTTTCGAGA
GCCTTGCCACTGAAGATCCTAGAAGAGCTGACGGAGAANGGATACATCAT
ATTGATGCCAATGTTGAATTCTGTGCTGTGATGAAAACAAATTAGGGGCT
CATCGTCTTTTGATGGGTGCTGAAATGGATTGCTGTGACTCAACTGATGA
TGGAAGGAGGTTTTATGTGGAGTTTAAGACAAGTCGTGAGCTGGATTATC
ATACTGAAGAAAGATTTGAGAAGAGAAACTGCTCAAGTTTTGGATCAATC
TTTCCTGGCTGGGGTTCATTTATCGNTGTTGATTTANNGATGATGCCAGT
CGACTTGNT
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