EY660673

Overview
NameEY660673
Unique NameEY660673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_DAUCA (40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.714e-45
Identity = 97/160 (60.62%), Postives = 105/160 (65.62%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGEQWPSQIADGGWAGGEXFRSPFLLSLFPKHTAXXATVPLGGDGWDAVPATP 492
            PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG I  GHKW+VMVDLFFYR                DY     +  +   +QW + I D  W GG+  +     S  P  T   A  P+ GDGWDA  A P
Sbjct:  127 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEEDLPVGDYVADYAAAPIGGADQW-NAIPDAQW-GGDVVQP--ANSAVPAGTWTDAG-PIAGDGWDAAAAPP 281          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_SOYBN (40S ribosomal protein SA OS=Glycine max PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.145e-44
Identity = 96/158 (60.76%), Postives = 106/158 (67.09%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGE-QWPSQIADGGWAGGEXFRSPFLLSLFPKHTAXXATVPLGGDGWDAVP 483
            PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPG KWDVMVDLFFYR               +DYA  +++    + + QWP  I D  W+       P +  +     A  A    GGD  +AVP
Sbjct:  134 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAVDYAITDFNAGAIAADGQWPGTI-DQSWSDAVPQPIPAVPGVNWGAPA-EAPAAAGGDWGEAVP 289          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_VITVI (40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.684e-44
Identity = 97/171 (56.73%), Postives = 105/171 (61.40%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXI-DYATAEY---SMNLTSGEQWPSQIADG-GWAGGEXFRSPFLL---SLFPKHTAXXATVPLGGDGWDAVPATPCTV 501
            PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR TI PGHKWDVMVDLFFYR                 DY   +Y   ++    G  W + I D   W       +P      S +       + VP+  DGWDA  A P  V
Sbjct:  127 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGGDWGAPITDAPQWGADVPAVAPIPAVPGSNWGDAAPMPSAVPIATDGWDAAAAPPVAV 297          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_CICAR (40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.266e-43
Identity = 88/122 (72.13%), Postives = 95/122 (77.87%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMN-LTSGEQWPSQIADGGW 375
            PRTDHQPIKEAALGNIPTIAFCDTDSPM YVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPG KWDVMVDLFFYR                DYA A+++++ + S  QWP+ I D  W
Sbjct:  130 PRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAPDYAIADFNVSAIPSDGQWPAAI-DQPW 250          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA1_ARATH (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana GN=RPSaA PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 4.979e-40
Identity = 92/160 (57.50%), Postives = 101/160 (63.12%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR-XXXXXXXXXXXXXXXIDYA---TAEYSMNLTSGEQW-PSQIADGGWAGGEXFRSPFLLSLFPKHTAXXATVPLGGDGWDA 477
            PRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI  G KWDVMVDLFFYR                 +Y      EY M    G+QW  +QI D  W G    ++P   +      +  A  P  G GW+A
Sbjct:  131 PRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGM--VGGDQWTTAQIPDAAWPG--EGQAPISAAPAAASWSDSAAAPADG-GWEA 285          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA2_ARATH (40S ribosomal protein Sa-2 OS=Arabidopsis thaliana GN=RPSaB PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 8.493e-40
Identity = 81/124 (65.32%), Postives = 89/124 (71.77%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGEQW-PSQIADGGWAG 381
            PRTDHQPIKE ALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI    KWDVMVDLFFYR                + A  +    +  G+QW  +QI+D  W+G
Sbjct:  132 PRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGD------EEAEVQADYGMVGGDQWTTAQISDAAWSG 249          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_BRANA (40S ribosomal protein SA OS=Brassica napus GN=LRP PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.449e-39
Identity = 92/164 (56.10%), Postives = 100/164 (60.98%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSM---NLTSGEQW-PSQIADGGWAGGEXFRSPFLLSLFPKHTAXXATVPLGGDGWD-AVPAT 489
            PRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP  KWDVMVDLFFYR                    AE+ +       G+QW  + I D  W G    ++P   +         A       GWD AVP T
Sbjct:  128 PRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPAQKWDVMVDLFFYREPEETKPEDEDEVA----PQAEFGLPAPEYGGGDQWTTAAIPDAAWPG--EAQAPISAAPAAGSWNDSAAPAAAEGGWDAAVPPT 285          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_OSTTA (40S ribosomal protein SA OS=Ostreococcus tauri GN=Ot03g03270 PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.577e-30
Identity = 62/79 (78.48%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 249
            PRTD QPI E A  NIPTIAFCDTDSP++ VDI IPANNK K SIGCL++LLARMVLQMRGTI P + WDVMVDLFFYR
Sbjct:  124 PRTDAQPISETAFVNIPTIAFCDTDSPLKNVDIAIPANNKAKQSIGCLYYLLARMVLQMRGTISPANPWDVMVDLFFYR 202          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_OSTLU (40S ribosomal protein SA OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_12355 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.359e-29
Identity = 59/79 (74.68%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 249
            PRTD QPI E A  N+PTIAFCDTDSP++ VD+ IPANNK KHSIGCL++LLARMVLQMRGT+   + WDVMVDLFFYR
Sbjct:  124 PRTDAQPISETAYVNLPTIAFCDTDSPLKNVDVAIPANNKAKHSIGCLYYLLARMVLQMRGTVSAANPWDVMVDLFFYR 202          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_XENLA (40S ribosomal protein SA OS=Xenopus laevis GN=rpsa PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.954e-29
Identity = 75/187 (40.11%), Postives = 97/187 (51.87%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGE-QWPSQIAD------GGWAGGEXFRSPFLLSL---------FPKHTAXXATVPLGGDGWDAVPATPCTVXXG-TTQW 522
            PR DHQPI EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR                + A AE +      + +W + +A+        W+ G    S  +             PK T   +T P   D W A P    +   G TT+W
Sbjct:  127 PRADHQPITEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKE--------EQAAAEKATTKEEFQGEWTAPVAEFPQAEVADWSEGVQVPSVPIQQFTAERTDVPPAPKPTEDWSTQPASTDDWSAAPTAQASEWTGTTTEW 305          
The following BLAST results are available for this feature:
BLAST of EY660673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RSSA_DAUCA6.714e-4560.6340S ribosomal protein SA OS=Daucus carota GN=179B ... [more]
RSSA_SOYBN1.145e-4460.7640S ribosomal protein SA OS=Glycine max PE=2 SV=1[more]
RSSA_VITVI5.684e-4456.7340S ribosomal protein SA OS=Vitis vinifera GN=GSVI... [more]
RSSA_CICAR1.266e-4372.1340S ribosomal protein SA OS=Cicer arietinum GN=RAP... [more]
RSSA1_ARATH4.979e-4057.5040S ribosomal protein Sa-1 OS=Arabidopsis thaliana... [more]
RSSA2_ARATH8.493e-4065.3240S ribosomal protein Sa-2 OS=Arabidopsis thaliana... [more]
RSSA_BRANA1.449e-3956.1040S ribosomal protein SA OS=Brassica napus GN=LRP ... [more]
RSSA_OSTTA3.577e-3078.4840S ribosomal protein SA OS=Ostreococcus tauri GN=... [more]
RSSA_OSTLU1.359e-2974.6840S ribosomal protein SA OS=Ostreococcus lucimarin... [more]
RSSA_XENLA3.954e-2940.1140S ribosomal protein SA OS=Xenopus laevis GN=rpsa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-024-G03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660673 ID=EY660673; Name=EY660673; organism=Citrus sinensis; type=EST; length=812bp
CCACGCGTCCGCCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCTCT
TGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTT
ATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGG
TGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTAT
TCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGGG
AGCCAGAAGAAACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTATTGAT
TATGCTACAGCAGAGTACAGCATGAATCTTACCAGTGGTGAGCAATGGCC
TTCCCAAATTGCTGATGGTGGGTGGGCGGGTGGTGAANNATTCAGAAGCC
CATTCCTGTTGTCCCTATTTCCCAAACACACCGCNNNNNCAGCTACAGTT
CCTTTGGGTGGGGATGGATGGGATGCAGTGCCGGCAACACCATGCACAGT
NNNNNACGGCACCACCCAATGGCANCAGTTTACAGGTCCCTGGAGGTGTT
TGGGGGGCCCCACAAAAAAAAGGGGGGGGGGAAAAAATTTTTTTTTTTTG
AAAGAAAATGGTTTTTTTTAAAAAAAAAAAATTAAAAAAAAAACTTTTTT
TTTTCCCTAACCAAAACAAAAAAANNTGTTTTGNGGAGAAAAAAATCTTC
TTTTCTTCTCTCCTCNNGGCTGAANAANAAATGAAAAGGAAGAGGGGCCG
GGAGAGAGNNGCCCCTCCCTCTTTCTCCCGNNCCTCCTTCCCTTTTCTTT
TTTTTTTTTANT
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