EY660580

Overview
NameEY660580
Unique NameEY660580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660580_ssr49 microsatellite EY660580_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY660580 vs. ExPASy Swiss-Prot
Match: RECQ_HAEIN (ATP-dependent DNA helicase recQ OS=Haemophilus influenzae GN=recQ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.583e-19
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  406 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLISVGAIKVLFVS 723
            +L+ V+GY SFR GQ E I   L+ +  ++V+ TG GKSLCYQIPA+   GLTLV+ PL++LM DQ+  L    I   FL+SSQ  E+  +    +  G +K+L+VS
Sbjct:   19 VLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVS 125          

HSP 2 Score: 25.409 bits (54), Expect = 3.583e-19
Identity = 11/25 (44.00%), Postives = 18/25 (72.00%), Query Frame = 2
Query:  794 EAHCVSEGPHNFGP-HTEVKGSYSS 865
            EAHC+S+  H+F P +T++ G  +S
Sbjct:  150 EAHCISQWGHDFRPEYTQLGGLKAS 174          
BLAST of EY660580 vs. ExPASy Swiss-Prot
Match: RECQ_ECOLI (ATP-dependent DNA helicase recQ OS=Escherichia coli (strain K12) GN=recQ PE=1 SV=5)

HSP 1 Score: 88.1965 bits (217), Expect = 1.733e-18
Identity = 46/108 (42.59%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  403 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLISVGAIKVLFVS 723
            ++L+  +GY  FR GQ E I  VL  +  ++V+PTG GKSLCYQIPA++L GLT+VV PL++LM DQ+  L    +    L+S+Q  E+  E +     G I++L+++
Sbjct:   15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIA 122          

HSP 2 Score: 25.7942 bits (55), Expect = 1.733e-18
Identity = 10/25 (40.00%), Postives = 13/25 (52.00%), Query Frame = 2
Query:  794 EAHCVSEGPHNFGPHTEVKGSYSSR 868
            EAHC+S+  H+F P     G    R
Sbjct:  147 EAHCISQWGHDFRPEYAALGQLRQR 171          
BLAST of EY660580 vs. ExPASy Swiss-Prot
Match: RECQ_BACSU (Probable ATP-dependent DNA helicase recQ OS=Bacillus subtilis GN=recQ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.734e-18
Identity = 43/108 (39.81%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  406 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLISVGAIKVLFVS 723
            LL   +GY+ FR GQ EAI++V + +++T  ++PTG GKS+CYQIPA++  G T+V+ PL++LM DQ+  L    I+  +++S+Q  +E+ E +  +  GA K+ +++
Sbjct:    8 LLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYIT 115          

HSP 2 Score: 24.2534 bits (51), Expect = 1.734e-18
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  794 EAHCVSEGPHNFGP 835
            EAHC+S+  H+F P
Sbjct:  140 EAHCISQWGHDFRP 153          
BLAST of EY660580 vs. ExPASy Swiss-Prot
Match: RECQ_PASMU (ATP-dependent DNA helicase recQ OS=Pasteurella multocida GN=recQ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.806e-18
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  406 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQL-RHLPPVIHGGFLSSSQRPEEVAETIRLISVGAIKVLFVS 723
            +L  V+GY SFR GQ E I   L  K +++++ TG GKSLCYQIPA+   GLTLV+ PL++LM DQ+ + L   I   +L+SSQ   E  +    +  G +K+L+VS
Sbjct:   29 VLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISPLISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVS 135          

HSP 2 Score: 25.0238 bits (53), Expect = 3.806e-18
Identity = 10/21 (47.62%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  794 EAHCVSEGPHNFGP-HTEVKG 853
            EAHC+S+  H+F P +T++ G
Sbjct:  160 EAHCISQWGHDFRPEYTQLGG 180          
BLAST of EY660580 vs. ExPASy Swiss-Prot
Match: RECQ_SALTY (ATP-dependent DNA helicase recQ OS=Salmonella typhimurium GN=recQ PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.391e-17
Identity = 44/108 (40.74%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  403 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQL-RHLPPVIHGGFLSSSQRPEEVAETIRLISVGAIKVLFVS 723
            ++L+  +GY  FR GQ   I   L  +  ++V+PTG GKSLCYQIPA++L GLT+VV PL++LM DQ+ + L   +    L+S+Q  E+  E +     G I++L+++
Sbjct:   15 QVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIA 122          

HSP 2 Score: 25.7942 bits (55), Expect = 2.391e-17
Identity = 10/25 (40.00%), Postives = 13/25 (52.00%), Query Frame = 2
Query:  794 EAHCVSEGPHNFGPHTEVKGSYSSR 868
            EAHC+S+  H+F P     G    R
Sbjct:  147 EAHCISQWGHDFRPEYAALGQLRQR 171          
BLAST of EY660580 vs. ExPASy Swiss-Prot
Match: RECQ4_MOUSE (ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.065e-17
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  424 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLISVGAIKVLFVS 723
            GY +FR GQ  AI  +L   ST+LVLPTGAGKSLCYQ+PA++     P LTLVV PL++LM DQ+  LP  +    L S    ++    ++ +    + VL VS
Sbjct:  494 GYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLSLMDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVS 597          

HSP 2 Score: 24.2534 bits (51), Expect = 3.065e-17
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2
Query:  794 EAHCVSEGPHNFGP 835
            E HC+S+  HNF P
Sbjct:  628 EVHCLSQWSHNFRP 641          
BLAST of EY660580 vs. ExPASy Swiss-Prot
Match: RECQ4_HUMAN (ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.179e-17
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  424 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLISVGAIKVLFVS 723
            G+ +FR GQ  A+  +L   ST+LVLPTGAGKSLCYQ+PA++     P LTLVV PL++LM DQ+  LPP +    + S    ++    ++ I    + VL ++
Sbjct:  477 GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSLMDDQVSGLPPCLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLT 580          

HSP 2 Score: 25.7942 bits (55), Expect = 5.179e-17
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  794 EAHCVSEGPHNFGP 835
            EAHC+S+  HNF P
Sbjct:  606 EAHCLSQWSHNFRP 619          
BLAST of EY660580 vs. ExPASy Swiss-Prot
Match: RECQ_SYNY3 (ATP-dependent DNA helicase recQ OS=Synechocystis sp. (strain PCC 6803) GN=recQ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.410e-15
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 1
Query:  382 ASNENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHL 615
            A  ++L   LR ++GYD FR  Q E I  +L ++  ++VLPTG GKS+C+Q+PA++  GLTLVV PLVALM DQ++ L
Sbjct:    2 ADRQSLEEALRRIWGYDHFRYPQGEVIDCLLARRDCLVVLPTGGGKSICFQLPALLGEGLTLVVSPLVALMEDQVQSL 79          
BLAST of EY660580 vs. ExPASy Swiss-Prot
Match: RECQ1_RAT (ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.427e-14
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  406 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEV 669
            +LR V+    FR  QLE +   + +K   LV+PTG GKSLCYQ+PA+   G TLV+CPL++LM DQL  L  + I    L+SS   E V
Sbjct:   82 VLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHV 170          
BLAST of EY660580 vs. ExPASy Swiss-Prot
Match: SGS1_YEAST (ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae GN=SGS1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.888e-14
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  385 SNENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLVALMIDQLRH-LPPVIHGGFLSSSQRPEEVAETIRLISVGAIKVLFVS 723
            S+E L RL   V+    FR  QLEA+   L  K   +++PTG GKSLCYQ+PA++      G T+V+ PL++LM DQ+ H L   I     SS    E+  +T  L   G + ++++S
Sbjct:  663 SDEVLYRLHE-VFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLVYIS 779          

HSP 2 Score: 23.8682 bits (50), Expect = 7.888e-14
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 2
Query:  794 EAHCVSEGPHNFGP 835
            EAHCVS   H+F P
Sbjct:  809 EAHCVSNWGHDFRP 822          
The following BLAST results are available for this feature:
BLAST of EY660580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RECQ_HAEIN3.583e-1945.79ATP-dependent DNA helicase recQ OS=Haemophilus inf... [more]
RECQ_ECOLI1.733e-1842.59ATP-dependent DNA helicase recQ OS=Escherichia col... [more]
RECQ_BACSU1.734e-1839.81Probable ATP-dependent DNA helicase recQ OS=Bacill... [more]
RECQ_PASMU3.806e-1844.86ATP-dependent DNA helicase recQ OS=Pasteurella mul... [more]
RECQ_SALTY2.391e-1740.74ATP-dependent DNA helicase recQ OS=Salmonella typh... [more]
RECQ4_MOUSE3.065e-1745.19ATP-dependent DNA helicase Q4 OS=Mus musculus GN=R... [more]
RECQ4_HUMAN5.179e-1742.31ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=R... [more]
RECQ_SYNY36.410e-1551.28ATP-dependent DNA helicase recQ OS=Synechocystis s... [more]
RECQ1_RAT5.427e-1447.19ATP-dependent DNA helicase Q1 OS=Rattus norvegicus... [more]
SGS1_YEAST7.888e-1438.14ATP-dependent helicase SGS1 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-G03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660580 ID=EY660580; Name=EY660580; organism=Citrus sinensis; type=EST; length=890bp
CCACGCGTCCGCCAAGGTATTAACGGAATCAAAAGTGATGCATTTGCTAA
GAAGAAGAAGCAAATTAATTTAGTAAGCGTTGATGTTCCCTTGCCGCCGG
CAAAATTGCGAAAATGTAACGGTGAAGGTAACTTCGTGAGGTTGAATCTG
AATAACAATAAGCGTAAATTCGCTAACAAAGGTAAAAGAAATAAGTCATT
TAGAGGTAAACTCTCTTATAGGAGAAGCAAGAAGAAGTTGAATAAAAATG
AAACAGAGAGTAAAGGAGCTGAAGATGAATACGGTTTGATTATTGAAAAT
CTTGAGCAGAATCAGAAGAATAGAAGAGCTGCTGGTGAGCTTGAGTTGGT
GGAAGACGCGGTGAGAGCCGTCAAAGACGAGGCTTCGAATGAGAATCTAG
GGAGGTTGTTGAGGCTTGTGTATGGTTATGATTCGTTTCGCGATGGACAG
CTAGAGGCCATAAAGATGGTCCTTGATAAGAAGTCAACGATGCTGGTTTT
GCCAACTGGTGCAGGGAAATCGTTGTGTTATCAGATACCGGCAATGATTT
TGCCAGGGCTGACTCTGGTTGTTTGTCCCTTAGTGGCTTTAATGATTGAT
CAATTGAGGCATCTGCCTCCAGTGATTCATGGCGGCTTTTTGAGTAGTAG
TCAGAGACCTGAAGAGGTTGCTGAGACGATAAGGCTGATTTCAGTAGGGG
CAATAAAGGTGCTTTTTGTTTCTCAGAAAGATTTTTAATGCAGATTTTTT
GCAATATTTACTGCTACTTCATTATAACACTTGGTGGGGAGGAGAAGCTC
ACTGTGTATCTGAGGGGCCCCATAATTTCGGCCCCCATACTGAGGTTAAA
GGGTCTTACTCCAGCAGGGTCATGTTGAAGCACTCTGGCA
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