EY660491

Overview
NameEY660491
Unique NameEY660491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660491_ssr386 microsatellite EY660491_ssr386:386..397. BLAST: Citrus ESTs to Prunus persica proteins V1
EY660491_ssr402 microsatellite EY660491_ssr402:402..416. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY660491 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.200e-18
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 3
Query:  483 IGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 641
            IGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct:  307 IGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWD 359          

HSP 2 Score: 73.1738 bits (178), Expect = 2.204e-12
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 1
Query:  241 QVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 351
            +VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF+
Sbjct:  271 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 307          
BLAST of EY660491 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.672e-18
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 3
Query:  483 IGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 641
            IGRPVV++LAAEGE GV++VL+MLR+EFEL MALSGCRSL EITR+HIVTEWD
Sbjct:  307 IGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWD 359          

HSP 2 Score: 72.7886 bits (177), Expect = 2.878e-12
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 1
Query:  241 QVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 351
            +VVKATQGR+PVFLDGGVRRGTDVFKALALGASGIF+
Sbjct:  271 EVVKATQGRVPVFLDGGVRRGTDVFKALALGASGIFI 307          
BLAST of EY660491 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.040e-17
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 3
Query:  483 IGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 641
            IGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI  +WD
Sbjct:  307 IGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359          

HSP 2 Score: 69.707 bits (169), Expect = 2.437e-11
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 1
Query:  241 QVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 351
            +VVKA QGRIPVFLDGGVRRGTDVFKALALGA+G+F+
Sbjct:  271 EVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFI 307          
BLAST of EY660491 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.157e-11
Identity = 24/37 (64.86%), Postives = 32/37 (86.49%), Query Frame = 1
Query:  241 QVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 351
            ++V+A +G++ VFLDGGVR+GTDV KALALGA  +FV
Sbjct:  277 EIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFV 313          

HSP 2 Score: 34.6538 bits (78), Expect = 1.157e-11
Identity = 16/24 (66.67%), Postives = 19/24 (79.17%), Query Frame = 3
Query:   51 SNHGARQLDYVPATIMALEEVSQS 122
            SNHGARQLD VPATI  L E+ ++
Sbjct:  258 SNHGARQLDGVPATIDVLPEIVEA 281          
BLAST of EY660491 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.157e-11
Identity = 24/37 (64.86%), Postives = 32/37 (86.49%), Query Frame = 1
Query:  241 QVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 351
            ++V+A +G++ VFLDGGVR+GTDV KALALGA  +FV
Sbjct:  277 EIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFV 313          

HSP 2 Score: 34.6538 bits (78), Expect = 1.157e-11
Identity = 16/24 (66.67%), Postives = 19/24 (79.17%), Query Frame = 3
Query:   51 SNHGARQLDYVPATIMALEEVSQS 122
            SNHGARQLD VPATI  L E+ ++
Sbjct:  258 SNHGARQLDGVPATIDVLPEIVEA 281          
The following BLAST results are available for this feature:
BLAST of EY660491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GOX2_ARATH1.200e-1883.02Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH2.672e-1881.13Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
GOX_SPIOL5.040e-1775.47Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
HAOX1_MOUSE1.157e-1164.86Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX1_HUMAN1.157e-1164.86Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-022-G08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660491 ID=EY660491; Name=EY660491; organism=Citrus sinensis; type=EST; length=871bp
GGTATGCAGCGCGGATTGCAGTTCAAGCTGGAGCAGCTGGGATTATTGTA
TCCAATCATGGAGCTCGTCAACTTGACTATGTCCCTGCCACTATCATGGC
CCTGGAAGAGGTAAGTCAAAGCGATTTACAGCTGATTTTTATTTTTTATT
TTTTCATTAGCTCGAAACTTCTACTGAGGTTGAATGTAGATTATCCCTTT
CTCAAAATGTTTTCATACTTTATCTTCGTCTTCACAAATTCAGGTTGTGA
AAGCTACTCAGGGGCGTATTCCTGTGTTCTTGGATGGTGGTGTTAGGCGA
GGAACTGATGTCTTCAAAGCATTGGCACTTGGAGCCTCTGGTATATTTGT
AAGTATCATGCCCTGCCAATGTCCCTTAACAGAAAAAATAAATAAATAAG
TAAATAAAATAAAATAAAAAATATCATTTCTGTTCAAACAAATGGAGACT
GAAGGCTTTTATAATTATGGTCTTGATTTCAGATTGGACGACCAGTGGTG
TACTCATTGGCAGCTGAGGGAGAGAAAGGCGTTAGAAGAGTACTCGAGAT
GCTGCGTGAAGAATTTGAGCTAGCAATGGCACTAAGTGGTTGCCGCTCAC
TCAAAGAGATTACTCGTGATCACATCGTCACTGAATGGGATGCTTCTCTC
CCTCGCCCGGTTCCCAGGTTATAGTTACGTGCATGCAAAATAGAAGAAAG
AGCAATAATTTGGTTACTTTCTATTACTTCTTTTTCTTGGAGAACTTGTT
CATGTTTAATTGAGTCTGAAATATTTTAAGCTTCTGTTATGATGAATATG
GCTACTTCTGCCCTTTCTGNATATTCTTTCTTAAAACNTTATCATATAGG
TTTTGCTCGGATGGTGGATGA
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