EY660450

Overview
NameEY660450
Unique NameEY660450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY660450 vs. ExPASy Swiss-Prot
Match: RK5_ARATH (50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana GN=RPL5 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.089e-25
Identity = 54/74 (72.97%), Postives = 67/74 (90.54%), Query Frame = 2 
Query:   23 KEQSVFPEIRYDALGKPKGMDVCITTTAKTDKEGQRLLALMGMPFREGGGPAN--LIRKKKLKAHHFDSKSKGK 238
            K+Q VFPEIR+DA+GK +GMDVCI+TTAK+D+EGQ+LLALMGMPFREGGG +   ++RKKKLK+HHFD+K KGK
Sbjct:  188 KDQGVFPEIRFDAVGKTRGMDVCISTTAKSDQEGQKLLALMGMPFREGGGGSTGAIVRKKKLKSHHFDAKGKGK 261
[Close]
BLAST of EY660450 vs. ExPASy Swiss-Prot
Match: RK5_SPIOL (50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea GN=RPL5 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.577e-24
Identity = 52/72 (72.22%), Postives = 64/72 (88.89%), Query Frame = 2 
Query:   23 KEQSVFPEIRYDALGKPKGMDVCITTTAKTDKEGQRLLALMGMPFREGGGPANLIRKKKLKAHHFDSKSKGK 238
            +EQSVFPEI+ + +GK +GMDVCITTTAKTDKE  +LL+LMGMPFREG GP+ L+RKKKLK+HHFD+K KG+
Sbjct:  148 REQSVFPEIKPEIVGKARGMDVCITTTAKTDKEAYKLLSLMGMPFREGSGPSTLVRKKKLKSHHFDAK-KGR 218
[Close]
BLAST of EY660450 vs. ExPASy Swiss-Prot
Match: RK5_ORYSJ (50S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL5 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.149e-17
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 2 
Query:   23 KEQSVFPEIRYDALGKPKGMDVCITTTAKTDKEGQRLLALMGMPFREGGGPANLIRKKKLKAHHFDSKSKGK 238
            ++Q VFPEI Y+  GK  GMDVCI TTAKTD E  RLL L+GMPF E    + +IRKK+LK HHF SK +G+
Sbjct:  207 RDQGVFPEIPYEVGGKKNGMDVCIVTTAKTDNEALRLLTLLGMPFAEHIKSSVVIRKKRLKRHHFMSKGRGR 278
The following BLAST results are available for this feature:
BLAST of EY660450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RK5_ARATH1.089e-2572.9750S ribosomal protein L5, chloroplastic OS=Arabido... [more]
RK5_SPIOL4.577e-2472.2250S ribosomal protein L5, chloroplastic OS=Spinaci... [more]
RK5_ORYSJ4.149e-1759.7250S ribosomal protein L5, chloroplastic OS=Oryza s... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-022-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660450 ID=EY660450; Name=EY660450; organism=Citrus sinensis; type=EST; length=907bp
TCCCGGGTCGACCACGCGTCCGAAAGAACAGAGTGTTTTCCCGGAGATCA
GGTATGATGCTCTTGGCAAGCCCAAGGGAATGGATGTTTGCATTACAACA
ACCGCCAAAACTGATAAAGAAGGCCAGAGACTTTTGGCTCTCATGGGGAT
GCCTTTCAGAGAGGGTGGAGGTCCGGCAAATTTAATTCGCAAGAAGAAAC
TTAAGGCTCATCATTTTGATTCCAAATCAAAGGGAAAGTCAAGGAGATAA
GCATTTTTTCTTCTGAAGAGATGGGGGTATAGTTGTATCTAGTGTAATTG
CTTTGTTGTTTGAAACTTATGCTGCCAACAAGGGTGTTAAATAGATTCAA
TTTTTTCCGATTCTGATTAATATGCATTTACAGTTGATGTTCACCTTGCT
TGGTAATGTTTCCATGTACTTTGTTCTCTCAAGGCAATGTCAAAGAACAT
TATTTTTAAAAAAAAAAAAAAAAAAAAANNNNNNAAAAAAATAAAATTAA
TTTAATTTATTATTTTTATATAAAATTGGNAACATTTTAAAGAACCAATT
TTTATAGTCTTGTTTGACAACAATTTTACTGGGGGGGGCCCCCAAAGGCA
CCAATTTANCCCCTGTTTCTGCATCAATAGGGCTTCTTATTGGGCCACCA
AAATAATCCCGGGGGGGGTTTTTCCAATGGGGGGGGGGGAAAACGGGGAT
ACCCAAATTTAGGCCCCTGGAAAATCCCCTTTTCCGGGGGGGGAAAAGAA
AAAAGGGCCCCATACCCCCTCCAAAGATTGCCCCTTAATAGGAATGGACC
CTCCCTTTCAGGCCATTAGCGCCGGGCGGGGGGGTGCCCCCAAGGGCCCC
CACTCTGGGCCCCCTCGCCCCCCANTTCGGGTCCCCCCTTTTACACAATC
CGCGGTT
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