EY660447

Overview
NameEY660447
Unique NameEY660447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3369 contig Csv1_Contig3369:206..1096. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY660447 vs. ExPASy Swiss-Prot
Match: UBP24_ARATH (Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.252e-20
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  769 DLLPRGLXSLGNLCFLNATLXALMSCSPFVQLVQELRTRD 888
            D  PRGL + GNLCFLNATL AL+SCSPFVQL+Q+++ +D
Sbjct:  193 DFTPRGLINAGNLCFLNATLQALLSCSPFVQLLQKIQLQD 232

HSP 2 Score: 59.6918 bits (143), Expect = 1.252e-20
Identity = 57/170 (33.53%), Postives = 77/170 (45.29%), Query Frame = 3 
Query:  180 MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDL-----GAVGCPK---ENGHIKN-STNGPALSNGVNHLKAD--GIDFSSFHQNAGGHANPSPISKFHVL 656
            MS+ K+FVFGSFTE ETRS+ +       +KP    +  K      +QFGSLN   E+S V T  E   K   DG V    S       +  S   +ND D       ++  P+   +NG IK  S +  +L+NGV  +K D  G+D  S           +  SKF  L
Sbjct:    1 MSEKKVFVFGSFTEHETRSFFE-------QKPTKDPQNSKDKCVGSIQFGSLNLAAENSSVNTNGELK-KGEADGTVKSAGSQERLDASRPASSDKNNDSDAKLPRKNSLRVPEHVVQNGIIKEISESNKSLNNGV-AVKTDPIGLDNLSMSDGESDPVYKASSSKFQAL 161
The following BLAST results are available for this feature:
BLAST of EY660447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBP24_ARATH1.252e-2067.50Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-022-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660447 ID=EY660447; Name=EY660447; organism=Citrus sinensis; type=EST; length=890bp
CTTCATCAAACACAACGCCTCTCTCTGTGTCTCTTCAGGGTGTTCTCAAA
CCCTAGGTCGTTTTGCTTTTGATTTATTCTCTATACCTGTCGTTTTATTT
GCTTTCTCTGATATTTGTCAAAGTTTAAGATTTTGTTCAAGGTCTCTGGG
TGGTTCTAGGGTTCTGTCTCGTTCCGAATATGAGTGATTCTAAGTTATTT
GTTTTTGGGTCATTTACCGAAGAGGAAACCAGGTCATGGCTGCAAAGCCA
ATCATCTGGGAGTGTGAAAAAGCCTGTTTCATCTCGGAGAGCTGAAAAAC
CTGCTGAAGATAAAGAGTTGCAGTTCGGTTCATTGAATTTTGGAACTGAA
AGTTCTTTGGTTGGTACAACTGATGAACCGAATGGAAAGTCGGTTGTTGA
TGGGCCAGTTGTTTTTCAGCCCTCAACCTTGCTTAAGAAGGATGATAAAG
TGAAGAGTGTAGGAGCATCGAATGATCATGACTTGGGAGCCGTAGGATGT
CCAAAGGAAAACGGACACATTAAGAATTCTACTAATGGCCCTGCCCTCAG
TAATGGTGTGAATCATTTGAAAGCAGATGGTATTGATTTTAGTTCGTTTC
ACCAGAATGCAGGAGGCCATGCAAATCCTTCCCCAATTTCAAAATTTCAT
GTCCTTTGTGATGGAAATATTGATGGCAGGNATCAGAATGCGGCTGCCTG
CAACTCATCAATATCTGGTTCTNAAGAGTGCCCATGAAGGCAATTAATGA
GCCTGTTTAGTCTGTTAAGACTTACTACCACGAGGCTTAANNTCACTCGG
GAATTTATGTTTTCTTAATGCAACTCTTCANGCTCTGATGTCCTGTTCCC
CTTTTGTCCAGCTGGTGCAGGAACTTAGAACTCGTGACAT
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