EY660434

Overview
NameEY660434
Unique NameEY660434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8324 contig Csv1_Contig8324:1343..2195. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660434 vs. ExPASy Swiss-Prot
Match: LSG1_MACFA (Large subunit GTPase 1 homolog OS=Macaca fascicularis GN=LSG1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 RHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRAARIILKDFIDGKLPHFEMPPG 219
            RHV+E    IN+ KP+  E   RPP + ELL AY   RG++ + G PD+ R+AR ILKD+++GKL +   PPG
Sbjct:  481 RHVLEATYGINIIKPREDEDPHRPPTSEELLTAYGYMRGFMTAHGQPDQPRSARYILKDYVNGKLLYCHPPPG 553          
BLAST of EY660434 vs. ExPASy Swiss-Prot
Match: LSG1_BOVIN (Large subunit GTPase 1 homolog OS=Bos taurus GN=LSG1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 RHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRAARIILKDFIDGKLPHFEMPPG 219
            RHV+E    I++ KP+  E   RPP + ELL AY   RG++ + G PD+ R+AR ILKD+++GKL +   PPG
Sbjct:  474 RHVLEATYGIDIIKPREDEDPRRPPTSEELLTAYGCMRGFMTAHGQPDQPRSARYILKDYVNGKLLYCHPPPG 546          
BLAST of EY660434 vs. ExPASy Swiss-Prot
Match: LSG1_MOUSE (Large subunit GTPase 1 homolog OS=Mus musculus GN=Lsg1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 54/177 (30.51%), Postives = 83/177 (46.89%), Query Frame = 1
Query:    1 RHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRAARIILKDFIDGKLPHFEMPPGM-------SHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRT----------TPVLEHVLDDLSSFDLANGLASKKVNVKKPSASHKQHKKPQRKKDRSWRV 480
            R V+E    IN+ KP+  E   RPP + ELL AY   RG++ + G PD+ R+AR ILKD++ GKL +   PPG         H+++ +E       L L       A+++    D+T          T  ++ V+       L    A+   NV  P    K+H   + KK++S R+
Sbjct:  466 RRVLEVTYGINIIKPREDEDPYRPPTSEELLTAYGCMRGFMTAHGQPDQPRSARYILKDYVGGKLLYCHPPPGKDPVAFQHQHQQL-LESKVKGGELRLQPGKGRKAKQIENVVDKTFFHQENVRALTKGVQAVMGYKPGHGLVTAAAASAENV--PGKPWKKHGN-RNKKEKSRRL 638          
BLAST of EY660434 vs. ExPASy Swiss-Prot
Match: LSG1_HUMAN (Large subunit GTPase 1 homolog OS=Homo sapiens GN=LSG1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 RHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRAARIILKDFIDGKLPHFEMPPG 219
            RHV+E    IN+  P+  E   RPP + ELL AY   RG++ + G PD+ R+AR ILKD++ GKL +   PPG
Sbjct:  480 RHVLEATYGINIITPREDEDPHRPPTSEELLTAYGYMRGFMTAHGQPDQPRSARYILKDYVSGKLLYCHPPPG 552          
BLAST of EY660434 vs. ExPASy Swiss-Prot
Match: LSG1_RAT (Large subunit GTPase 1 homolog OS=Rattus norvegicus GN=Lsg1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 55/177 (31.07%), Postives = 82/177 (46.33%), Query Frame = 1
Query:    1 RHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRAARIILKDFIDGKLPHFEMPPGM-------SHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRT----------TPVLEHVLDDLSSFDLANGLASKKVNVKKPSASHKQHKKPQRKKDRSWRV 480
            R V+E    IN+ KP   E   RPP + ELL AY   RG++ + G PD+ R+AR ILKD++ GKL +   PPG         H ++ +E+      L L       A++V    D+T          T  ++ V+       L    A+   NV  P    K+H   + KK++S R+
Sbjct:  477 RRVLEATYGINIIKPGEDEDPYRPPTSEELLTAYGCMRGFMTAHGQPDQPRSARYILKDYVRGKLLYCHPPPGKDPVAFQHQHRQL-LENKIKGEELRLQPGKTQKAKQVENVVDKTFFHQENVRALTKGVQAVMGYKPGSGLVTAAAASAENV--PGKPWKKHGN-RNKKEKSRRL 649          
BLAST of EY660434 vs. ExPASy Swiss-Prot
Match: LSG1_DROME (Large subunit GTPase 1 homolog OS=Drosophila melanogaster GN=ns3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    1 RHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRAARIILKDFIDGKLPHFEMPPGMSHEE 234
            RHV+E+   I + KP   E   RPP + ELL AY  +RG++ S+G PD+ R+AR +LKD+++G+L +   PP +   E
Sbjct:  431 RHVLEDKYGIVIAKPLEGEDMERPPHSEELLLAYGYNRGFMTSNGQPDQARSARYVLKDYVNGRLLYAMSPPSVPQTE 508          
BLAST of EY660434 vs. ExPASy Swiss-Prot
Match: LSG1_DANRE (Large subunit GTPase 1 homolog OS=Danio rerio GN=lsg1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 38/121 (31.40%), Postives = 68/121 (56.20%), Query Frame = 1
Query:    1 RHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRAARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPV--LEHVLD 357
            R+V+E    IN+ +P+  E   RPP   ELL AY   RG++ + G PD++R+AR +LKD++ GKL +   PP ++ E+   +  + +  +       + AE++   G + + V  +E+ +D
Sbjct:  462 RNVLEGTYGINIIRPREDEDPDRPPTYEELLMAYGYMRGFMTAHGQPDQSRSARYVLKDYVSGKLLYCHPPPHINPEDFQPQHAKFAMRI-------TGAEQIDGSGGKPSKVKRIENTVD 575          
The following BLAST results are available for this feature:
BLAST of EY660434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LSG1_MACFA3.630e-1247.95Large subunit GTPase 1 homolog OS=Macaca fascicula... [more]
LSG1_BOVIN8.086e-1246.58Large subunit GTPase 1 homolog OS=Bos taurus GN=LS... [more]
LSG1_MOUSE1.379e-1130.51Large subunit GTPase 1 homolog OS=Mus musculus GN=... [more]
LSG1_HUMAN2.353e-1146.58Large subunit GTPase 1 homolog OS=Homo sapiens GN=... [more]
LSG1_RAT5.241e-1131.07Large subunit GTPase 1 homolog OS=Rattus norvegicu... [more]
LSG1_DROME5.241e-1142.31Large subunit GTPase 1 homolog OS=Drosophila melan... [more]
LSG1_DANRE5.241e-1131.40Large subunit GTPase 1 homolog OS=Danio rerio GN=l... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-022-B08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660434 ID=EY660434; Name=EY660434; organism=Citrus sinensis; type=EST; length=853bp
AGACATGTCATTGAGAATGTCTGCAAGATAAATCTACCAAAACCTAAGCC
ATATGAATCTCAGTCTCGGCCACCTTTGGCATTAGAACTTTTGAGGGCTT
ATTGTGCTTCTCGTGGTTATGTTGCTTCAAGTGGACTGCCTGATGAAACT
AGAGCAGCTCGCATAATTTTGAAGGATTTTATTGATGGGAAGCTGCCCCA
TTTTGAGATGCCTCCTGGAATGTCTCATGAGGAAGTTGGCATGGAAGATA
CTCAAGCATCCAGCTTGTTGGAATTGCATGAATCCGATGCATCTGATGCG
GAAGAAGTTCCAGCACATGGCGATAGAACAACACCTGTTCTCGAGCATGT
GCTGGACGATCTTAGCTCATTTGACCTGGCCAATGGGCTTGCTTCAAAAA
AGGTCAATGTTAAGAAGCCCAGTGCATCGCATAAACAACACAAGAAGCCT
CAGAGGAAAAAGGATCGGTCATGGAGGGTTAGTAATGATGATGGTGATGG
AATGCCTGTAGTAAGAGTCTTCGAAAAGTCAGTGAATACAGGTCCTCTAC
AGACTGGATGAGGCCCATATTTAGTAGCATTGATATTGCTCATGCCTTCT
GGCTTGATCGTGCTTCTCCATCTTGCCATGTATGACTGCATATTTTGTTG
GCATATTGGTACAGAGATTTGTACTCCACTTGAAGAAAGCAGAGGATAAG
GGCAAAGAAGGATATGTTCATACACCCAAAGTACTGACATTGGGTGGAGT
GCAAATATCATATTCAGAAGTAAATTGAGTTATGCGTATGCTAANTGCTG
ATTATGATCGCATAATTCCATACCTATGGGCATCAGTATTGAATCTTGTC
TTC
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