EY660392

Overview
NameEY660392
Unique NameEY660392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660392_ssr81 microsatellite EY660392_ssr81:81..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY660392 vs. ExPASy Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.332e-45
Identity = 81/156 (51.92%), Postives = 103/156 (66.03%), Query Frame = 1
Query:  109 MTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVRVENXXXXXXXXXIKEKSGTPSTLYRGQLVLP-AVFAIGAVWDAFVRFW 573
            M   +P V A ++ VG N+ W  N+NYTIWA+ KHFY GDWL+FV+DRNQ N+LEVNKTDYE C +DHP+ NWT GAGRD+V LN T+HYY + GKG CYGGMKL+V+VE          +K            Q ++P ++FA  A+WD   R W
Sbjct:   17 MAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPPPKSAPVKNIGSVSMVTGLAQFMIPVSLFAFPAMWDVISRMW 172          
BLAST of EY660392 vs. ExPASy Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.451e-12
Identity = 41/102 (40.20%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  136 ATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISG-KGFCYGGMKLAVRVE 438
            AT + VG   GW    +Y+ WA DK F  GD L F Y      V EV ++DY+SC S + +   +TGA    +PL     +YFI G  G   GGMKL+++V+
Sbjct:   24 ATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSISTDSTGA--TTIPLKKAGKHYFICGVPGHSTGGMKLSIKVK 123          
BLAST of EY660392 vs. ExPASy Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.071e-11
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  136 ATRWIVGANQGWTNNV--NYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISG-KGFCYGGMKLAVRVE 438
            AT   VG + GWT  V  +Y  WA    F+ GD L F Y+    NVL+V++  ++SCNS  P  ++T+GA  D +PL     +YF+ G  G C  G K+ ++V+
Sbjct:    1 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGA--DSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVD 102          
The following BLAST results are available for this feature:
BLAST of EY660392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LAML_ARATH8.332e-4551.92Lamin-like protein OS=Arabidopsis thaliana GN=At5g... [more]
BCP_PEA5.451e-1240.20Blue copper protein OS=Pisum sativum PE=2 SV=1[more]
MAVI_CUCPE2.071e-1138.46Mavicyanin OS=Cucurbita pepo PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660392 ID=EY660392; Name=EY660392; organism=Citrus sinensis; type=EST; length=933bp
TTGCTCGACCCACGCGTCCGCTCTTTTTTGAAGGCTGAGAGTGCGGGAGT
GAGAGACAGAATGAGGGCAGGAATGACGGTGGCGGCGGCGGCCGTGCTGC
TGGTTGCCATGACGATTCTGGTGCCGGAGGTGGATGCAACTAGATGGATT
GTGGGAGCCAACCAAGGTTGGACCAATAACGTGAACTATACCATATGGGC
AAAAGATAAGCACTTTTACAATGGCGACTGGCTTTTCTTTGTGTATGACA
GGAACCAGATGAACGTGCTAGAGGTGAACAAAACAGACTACGAATCATGC
AACTCTGATCATCCCCTTCACAACTGGACCACAGGAGCAGGAAGAGATGT
GGTTCCTCTGAATGTGACCCGGCATTACTACTTCATCAGCGGAAAGGGCT
TCTGCTATGGTGGCATGAAGTTAGCTGTCCGTGTTGAGAACCCGCCTCCT
CCTCCCTCGGCTTCCCCTATTAAAGAAAAGAGCGGCACACCAAGTACTCT
CTACAGAGGCCAGCTTGTTTTGCCAGCAGTTTTTGCCATTGGTGCTGTCT
GGGATGCATTCGTCCGGTTCTGGTACAATGTNGAGCTTANTATTATTTAN
TAAGATAATCAGAATCTCCTTAGACATTCCTTAATCAATTTGTGAAAAGG
AATGGANCCCTCTCCACCTATTTTTTCGGGGGGAAAATTTTCTCACTGGG
GCAAACTATTTTGGTGTTGGGCCGGGAATTAANGGAAGGTAGGGGTTGGT
GGTCCCAATTTAAATGAAACGTTGNGGCTTGTTGGATTTGTGAACAAAAA
ACTAAGATTTCCTTTTATTTTTCCGAAAAAATGGATGCATGATTCGGGAA
ATGGTTTTGAATTCCTAAGGAAAGGTACTTGCTGTTTTCCCCCCCCCTTT
TTTTAATAAATGGCCTTTTTTTTTAAAAAAAAA
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