EY705831

Overview
NameEY705831
Unique NameEY705831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY705831 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.943e-53
Identity = 113/180 (62.78%), Postives = 126/180 (70.00%), Query Frame = 3
Query:  147 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEEIHTKWAMLGALG*HIP--------KSSPRMERRSEKQFGSMLGLNILLRRPGIFGRPPEGHA*TILATWRGRSGLWAPVHG 662
            MATSAI+QSAFAGQTAL+  NE VRK+G  +GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELE IH +WAMLGALG   P        K    +  ++  Q  S  GL+ L       G P   HA +ILA W  +  L   + G
Sbjct:    1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYL-------GNPNLIHAQSILAVWASQVVLMGLIEG 173          
BLAST of EY705831 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 6.726e-53
Identity = 114/180 (63.33%), Postives = 126/180 (70.00%), Query Frame = 3
Query:  147 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEEIHTKWAMLGALG*HIP--------KSSPRMERRSEKQFGSMLGLNILLRRPGIFGRPPEGHA*TILATWRGRSGLWAPVHG 662
            MATSAIQQSAFAGQTAL+QSNE V K+G   GGR++MRRTVKSAP SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELE IH +WAMLGALG   P        K    +  ++  Q  S  GL+ L       G P   HA +ILA W  +  L   V G
Sbjct:    1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYL-------GNPNLIHAQSILAIWACQVVLMGFVEG 173          
BLAST of EY705831 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 8.784e-53
Identity = 114/180 (63.33%), Postives = 126/180 (70.00%), Query Frame = 3
Query:  147 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEEIHTKWAMLGALG*HIPKSSPR--------MERRSEKQFGSMLGLNILLRRPGIFGRPPEGHA*TILATWRGRSGLWAPVHG 662
            MATSAIQQSAFAGQTAL+  NE VRK+G   GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELE IH +WAMLGALG   P+   +        +  ++  Q  S  GL+ L       G P   HA +ILA W  +  L   V G
Sbjct:    1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYL-------GNPNLIHAQSILAIWAAQVVLMGFVEG 173          
BLAST of EY705831 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.957e-52
Identity = 110/177 (62.15%), Postives = 128/177 (72.32%), Query Frame = 3
Query:  147 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEEIHTKWAMLGALG*HIPKSSPRMERRSEKQFGSMLGLNI---LLRRPGI--FGRPPEGHA*TILATWRGRSGLWAPVHG 662
            MATS IQQSAFAGQT L+  NE VRKVG  +GGR++MRRT+KSAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE IH +WAMLGALG   P+    +  ++  +FG  +       + +  G+   G P   HA +ILA W  +  L   V G
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE----LLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEG 172          
BLAST of EY705831 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.820e-51
Identity = 108/177 (61.02%), Postives = 124/177 (70.06%), Query Frame = 3
Query:  147 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEEIHTKWAMLGALG*HIPKSSPRMERRSEKQFGSMLGLNI---LLRRPGI--FGRPPEGHA*TILATWRGRSGLWAPVHG 662
            MATSAIQQSAF G+T LRQ NEF+RK G     R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELE IH++WAMLGALG     + P +  ++  +FG  +       +    G+   G P   HA +ILA W  +  L   V G
Sbjct:    1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG----CTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEG 173          
BLAST of EY705831 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 6.295e-51
Identity = 109/177 (61.58%), Postives = 127/177 (71.75%), Query Frame = 3
Query:  147 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEEIHTKWAMLGALG*HIPKSSPRMERRSEKQFGSMLGLNI---LLRRPGI--FGRPPEGHA*TILATWRGRSGLWAPVHG 662
            MA SAIQ SAFAGQTAL+Q +E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE IH++WAMLGALG   P+    +  ++  QFG  +       +    G+   G P   HA +ILA W  +  L   + G
Sbjct:    1 MAASAIQSSAFAGQTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPE----LLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEG 172          
BLAST of EY705831 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.080e-50
Identity = 111/180 (61.67%), Postives = 121/180 (67.22%), Query Frame = 3
Query:  147 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEEIHTKWAMLGALG*HIP--------KSSPRMERRSEKQFGSMLGLNILLRRPGIFGRPPEGHA*TILATWRGRSGLWAPVHG 662
            MAT AIQQSAF GQ   +  NEF+RKVG    GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELE IH +WAMLGALG   P        K    +  ++  Q  S  GL+ L       G P   HA +ILA W  +  L   V G
Sbjct:    1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYL-------GNPNLVHAQSILAIWACQVVLMGFVEG 173          
BLAST of EY705831 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.040e-45
Identity = 106/179 (59.22%), Postives = 123/179 (68.72%), Query Frame = 3
Query:  147 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEEIHTKWAMLGALG*HIPKSSPRMERRSEKQFGSMLGLNI---LLRRPGI--FGRPPEGHA*TILATWRGRSGLWAPVHG 662
            MAT SAIQ S+ AGQT LR Q NE V+KVG A   RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGWDTA +SADPETFAKNRELE IH +WAMLGALG   P+    +  ++  +FG  +       +    G+   G P   HA +ILA W  +  L   + G
Sbjct:    1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPE----LLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEG 174          
BLAST of EY705831 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.952e-45
Identity = 107/180 (59.44%), Postives = 122/180 (67.78%), Query Frame = 3
Query:  147 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEEIHTKWAMLGALG*HIP--------KSSPRMERRSEKQFGSMLGLNILLRRPGIFGRPPEGHA*TILATWRGRSGLWAPVHG 662
            MA SA+ Q+     TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELE IH++WAMLGALG   P        K    +  ++  Q  S  GL+ L       G P   HA +ILA W  +  L   V G
Sbjct:    1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYL-------GNPNLVHAQSILAIWAVQVVLMGFVEG 171          
BLAST of EY705831 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.952e-45
Identity = 107/180 (59.44%), Postives = 122/180 (67.78%), Query Frame = 3
Query:  147 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEEIHTKWAMLGALG*HIP--------KSSPRMERRSEKQFGSMLGLNILLRRPGIFGRPPEGHA*TILATWRGRSGLWAPVHG 662
            MA SA+ Q+     TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELE IH++WAMLGALG   P        K    +  ++  Q  S  GL+ L       G P   HA +ILA W  +  L   V G
Sbjct:    1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYL-------GNPNLVHAQSILAIWAVQVVLMGFVEG 171          
The following BLAST results are available for this feature:
BLAST of EY705831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB23_TOBAC3.943e-5362.78Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_GOSHI6.726e-5363.33Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB26_PETSP8.784e-5363.33Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_SILPR1.957e-5262.15Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB215_PEA4.820e-5161.02Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_LEMGI6.295e-5161.58Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_SOLLC4.080e-5061.67Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_PINTH1.040e-4559.22Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_ORYSJ3.952e-4559.44Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.952e-4559.44Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-049-D12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705831 ID=EY705831; Name=EY705831; organism=Citrus sinensis; type=EST; length=968bp
GGGGGGGGGGGGGGGGGGGGGGGGGAGGGTTGTNGGGTTTTNTTTNAATA
TTTNTNTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCA
CGCGTCCGGCTTCAGCACAAAAGGAAAAGCTTTCGCATAAGAACATATGG
CAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGG
CAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTAT
CACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCC
CAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATAC
TTGACTGGCGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATC
AGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGAGATCCACA
CCAAATGGGCAATGCTTGGAGCTCTTGGCTGACACATTCCTAAATCCTCC
CCAAGAATGGAGAGAAGGTCGGAAAAACAGTTTGGTTCGATGCTGGGCCT
CAATATTCTCCTAAGGCGGCCTGGGATATTTGGGAGGCCCCCCGAGGGGC
ATGCATAGACAATTTTGGCAACCTGGAGGGGCCGGTCGGGATTATGGGCT
CCGGTGCACGGACAAAACCCGTGGTCCCTCTCTTTGTCTATGGTTTCATC
CTCTTCTCTTTTTTGTGTTTTTTTGTTTTTTTTAGTTCTCTTTGATATCT
CACTGCTTGGTCCGTCCGCCTCGCGGCTCGCGGCCTTGGTGGTGGAGGTT
CTTCCCACTGCTCAGCCGAGTGGGAGTGGTGGCGGGTAAAGGAGTAACAG
GGTGATCACAGTATGGTTTGGGCCTTGTATGGCCCAGCAGGTGTTTGGNT
GTTTGTGTGTGGTGGGTCGGTTTGATAGTTGCTTAGTGTAGTATTGCTGT
TATGTTAGCCACTAGTGG
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