EY660386

Overview
NameEY660386
Unique NameEY660386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10785 contig Csv1_Contig10785:770..1624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660386 vs. ExPASy Swiss-Prot
Match: SGAT_ARATH (Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 5.982e-100
Identity = 124/142 (87.32%), Postives = 135/142 (95.07%), Query Frame = 1
Query:  217 RAALDLIFEEGLENVIERHRRLGKATRLSVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 642
            RAALDLIFEEGLEN+I RH RLGKATRL+VEAWGLKNCTQKEEW S+TVTAV+VP HI+ SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG++NELQLLGCLAGVEMILKDVGYPV +GSGVAAAS YLQ++IP+IPSRI
Sbjct:  260 RAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401          

HSP 2 Score: 130.568 bits (327), Expect = 5.982e-100
Identity = 58/68 (85.29%), Postives = 66/68 (97.06%), Query Frame = 3
Query:   12 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYG 215
            G+DVALTGSQKALSLPTG+GIVCASPKALEA+KT+KS++VFFDW DY+KFY LGT+WPYTPSIQLLYG
Sbjct:  191 GVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYG 258          
BLAST of EY660386 vs. ExPASy Swiss-Prot
Match: SGAA_METEA (Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=sgaA PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 2.861e-54
Identity = 81/134 (60.45%), Postives = 102/134 (76.12%), Query Frame = 1
Query:  217 RAALDLIFEEGLENVIERHRRLGKATRLSVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 618
            R AL  +FEEGLENV  RH  LG+ATR +V AWGLK C +  EW SDTVTA++ P  +++++I++ A+ RYNL+LG GL++VAGKVFRIGH+G LNEL LLG +AG EM L D G  V  GSGVAAAS+YL+ N
Sbjct:  264 REALACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSPEWNSDTVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEMSLIDNGVKVTPGSGVAAASSYLREN 397          

HSP 2 Score: 67.3958 bits (163), Expect = 2.861e-54
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 3
Query:   15 IDVALTGSQKALSLPTGMGIVCASPKALEAS-----KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYG 215
            +D A+ GSQK L LP G+G++C S KAL+A+     +  +  RV+FDW+D  K  N   ++PYTP + LLYG
Sbjct:  192 VDCAIAGSQKGLMLPAGLGVICVSQKALKAAEGQSGRNDRLARVYFDWEDQ-KKQNPTGYFPYTPPLPLLYG 262          
BLAST of EY660386 vs. ExPASy Swiss-Prot
Match: SGAA_HYPME (Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.382e-50
Identity = 75/134 (55.97%), Postives = 96/134 (71.64%), Query Frame = 1
Query:  217 RAALDLIFEEGLENVIERHRRLGKATRLSVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 618
            R +LDL+F EGL+NV  RH RL    R +V+AWGLK C ++ +W+SDTV+A++VP  I+S+ I + A+ RYN S GLGLNKVAGKVFRIGHLG L+E+ + G L   EM LKD G  +KLGSG  AA+ Y   N
Sbjct:  256 RTSLDLLFAEGLDNVFARHTRLASGVRAAVDAWGLKLCAKEPKWYSDTVSAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEMALKDNGVNLKLGSGTGAAAEYFSKN 389          

HSP 2 Score: 63.1586 bits (152), Expect = 1.382e-50
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 3
Query:   12 GIDVALTGSQKALSLPTGMGIVCASPKALE--ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYG 215
            G+D  ++GSQK   LPTG+GI+  S KAL+   SK  +  R FF ++D IK  + G F+PYTP+ QLL G
Sbjct:  186 GVDCCVSGSQKGFMLPTGLGILAVSQKALDINKSKNGRMNRCFFSFEDMIKTNDQG-FFPYTPATQLLRG 254          
BLAST of EY660386 vs. ExPASy Swiss-Prot
Match: Y959_METJA (Uncharacterized aminotransferase MJ0959 OS=Methanocaldococcus jannaschii GN=MJ0959 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.578e-28
Identity = 57/129 (44.19%), Postives = 78/129 (60.47%), Query Frame = 1
Query:  223 ALDLIFEEGLENVIERHRRLGKATRLSVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYL 609
            ALDL+ EEG+EN ++RH RL KATR  +EA G++    KE   S TVT+   P  I  S+       +YN+ +  G   +AGK+FRIGH+G   E ++L  LA VE+ LK++G+ VK  SGV  A   L
Sbjct:  256 ALDLVLEEGIENRVKRHERLAKATRAGLEAMGIE-LFAKERARSVTVTSAKYPEGIEDSKFRGILSNKYNIVVAGGQKHLAGKIFRIGHMGICGEKEVLATLACVELALKELGFEVK-ESGVEVAKEVL 382          

HSP 2 Score: 50.0618 bits (118), Expect = 1.578e-28
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 3
Query:   15 IDVALTGSQKALSLPTGMGIVCASPKALEA-SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLY 212
            ID+ +TGSQK L+ P G+  +  S KA E   K    V  + D   Y K+Y      PYTPS+ L Y
Sbjct:  185 IDICVTGSQKCLAAPPGLAAITVSEKAWEVIKKNDDKVGFYLDLLAYKKYYEEKKQTPYTPSVNLTY 251          
BLAST of EY660386 vs. ExPASy Swiss-Prot
Match: DHSS_ANACY (Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.993e-24
Identity = 43/131 (32.82%), Postives = 79/131 (60.31%), Query Frame = 1
Query:  226 LDLIFEEGLENVIERHRRLGKATRLSVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYP-VKLGSGVAAASAYLQN 615
            L ++ +EGLE++  RH R   ATR +++A  L      +E  S  +TAV  P  + + +I     +R++++L  G + ++ K+FR+GHLG +++  +L C+A +E++L ++G+     G+GVAAA+    N
Sbjct:  255 LGMMKKEGLESIFTRHERQKNATRAAMKALNLP-LFAADECASPAITAVATPG-MEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSDRDILSCIASLEVVLLELGHENFNSGAGVAAAARVFSN 383          

HSP 2 Score: 53.9138 bits (128), Expect = 5.993e-24
Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 3
Query:   12 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLL 209
            G+DV  +GSQK   +P G+G V  SPKA EA KTAK  + + D   Y K     T  P+TP + L+
Sbjct:  184 GLDVVASGSQKGYMIPPGLGFVSVSPKAWEAYKTAKLPKYYLDLGKYRKATAKNT-TPFTPPVNLM 248          
BLAST of EY660386 vs. ExPASy Swiss-Prot
Match: DHSS_SYNP1 (Soluble hydrogenase, small subunit OS=Synechococcus sp. (strain PCC 6716) PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.848e-22
Identity = 45/132 (34.09%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  217 RAALDLIFEEGLENVIERHRRLGKATRLSVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYP-VKLGSGVAAASAYL 609
            + AL+++  EGLE + +RH+RL +ATR +++A  L      +   S  +TAV  P  + +  I     +R++++L  G + + G++FRIGHLG + +  +L  ++ +E +L ++GY     G+GVAAAS  L
Sbjct:  252 KTALEMMQAEGLEAIFQRHQRLMQATRAAMKALNLP-LYAADSCASPAITAV-APQGVEAENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGDRDILAAVSALEAVLAELGYTNFTPGAGVAAASRVL 381          

HSP 2 Score: 47.3654 bits (111), Expect = 6.848e-22
Identity = 27/67 (40.30%), Postives = 36/67 (53.73%), Query Frame = 3
Query:   12 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLY 212
            G+DV  +GSQK   +P G+  V  SPKA EA KTA   + + D   Y K     T  P+TP + L +
Sbjct:  184 GLDVVGSGSQKGYMIPPGLAFVSVSPKAWEAYKTATLPKFYLDLGKYRKDAAKHT-TPFTPPVNLFF 249          
BLAST of EY660386 vs. ExPASy Swiss-Prot
Match: SGAT_MAIZE (Serine--glyoxylate aminotransferase (Fragments) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.886e-18
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 3
Query:   12 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGASSFG 230
            G+DVALTGSQKALS PTGMG+VCASP            RVFFDWKDY++     T+W Y  ++ L     ++G
Sbjct:   51 GVDVALTGSQKALSFPTGMGLVCASP------------RVFFDWKDYLR-----TYWHYDQALDLELAVEAWG 106          

HSP 2 Score: 38.891 bits (89), Expect = 1.886e-18
Identity = 34/93 (36.56%), Postives = 35/93 (37.63%), Query Frame = 1
Query:  298 LSVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA-GKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVK 573
            L+VEAWGL N                                RYNLSLGLGLNKVA GKVFR                        DVGYPVK
Sbjct:  100 LAVEAWGLSN--------------------------------RYNLSLGLGLNKVAGGKVFR------------------------DVGYPVK 136          
BLAST of EY660386 vs. ExPASy Swiss-Prot
Match: SPYA_RAT (Serine--pyruvate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Agxt PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 5.807e-11
Identity = 37/104 (35.58%), Postives = 51/104 (49.04%), Query Frame = 1
Query:  187 IPLPSNCCMGRAALDLIFEEGLENVIERHRRLGKATRLSVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 498
            +P+ S  C+ R +L LI E+GLEN   RHR         +   GLK   +  E    T+T V VP+  N  +IV      +N+ +  GL     KV RIG LG+
Sbjct:  286 LPVISLYCL-RESLALISEQGLENSWRRHREATAHLHKCLRELGLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFNIEISGGLGPSEDKVLRIGLLGY 388          

HSP 2 Score: 31.187 bits (69), Expect = 5.807e-11
Identity = 15/42 (35.71%), Postives = 24/42 (57.14%), Query Frame = 3
Query:   12 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 137
            GID+  +GSQK L+ P G+ ++  + KA     + K+  V F
Sbjct:  221 GIDILYSGSQKVLNAPPGISLISFNDKAKSKVYSRKTKPVSF 262          
The following BLAST results are available for this feature:
BLAST of EY660386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SGAT_ARATH5.982e-10087.32Serine--glyoxylate aminotransferase OS=Arabidopsis... [more]
SGAA_METEA2.861e-5460.45Serine--glyoxylate aminotransferase OS=Methylobact... [more]
SGAA_HYPME1.382e-5055.97Serine--glyoxylate aminotransferase OS=Hyphomicrob... [more]
Y959_METJA1.578e-2844.19Uncharacterized aminotransferase MJ0959 OS=Methano... [more]
DHSS_ANACY5.993e-2432.82Soluble hydrogenase 42 kDa subunit OS=Anabaena cyl... [more]
DHSS_SYNP16.848e-2234.09Soluble hydrogenase, small subunit OS=Synechococcu... [more]
SGAT_MAIZE1.886e-1850.68Serine--glyoxylate aminotransferase (Fragments) OS... [more]
SPYA_RAT5.807e-1135.58Serine--pyruvate aminotransferase, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660386 ID=EY660386; Name=EY660386; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGGGCATAGATGTGGCTCTAACTGGCTCTCAGAAAGCTCTT
TCACTTCCTACTGGAATGGGGATTGTTTGTGCAAGCCCCAAAGCTCTAGA
GGCATCCAAAACTGCAAAATCTGTCAGAGTTTTCTTTGATTGGAAAGACT
ACATAAAGTTTTACAATTTGGGAACATTTTGGCCATATACCCCTTCCATC
CAACTGCTGTATGGGGCGAGCAGCTTTGGATCTGATTTTTGAGGAAGGAC
TTGAAAATGTGATCGAAAGGCACCGTCGTTTGGGCAAAGCAACCAGGCTT
TCTGTGGAGGCATGGGGATTAAAGAACTGCACCCAGAAAGAAGAATGGTT
CAGTGACACCGTGACTGCTGTGATTGTTCCTTCACATATCAATAGTTCAG
AAATTGTTAGAAGGGCATGGCAGAGATACAATCTAAGCTTAGGTCTGGGC
CTTAACAAAGTTGCTGGTAAAGTATTTAGAATCGGGCATCTCGGCCACCT
GAATGAGTTGCAATTGTTGGGCTGTCTCGCTGGTGTGGAGATGATACTAA
AAGACGTGGGCTACCCGGTTAAGCTGGGAAGCGGGGTTGCAGCTGCTTCT
GCGTACCTACAGAACAACATTCCTATGATCCCATCCAGGATCTGAGTCAT
CTTTCATCAATGTAATTATTTCTCTTCTATTCATGCGCTTCAGGTCACTA
TGTACAAAGAATGTATAATTTCCTATGCTTGCTCTTATTAGAGGCTCACC
GAGAAAACTCTCCCTTAATCATTGCTTCCTGTATTGNGATGTACTTGAAA
CGTCTTATTAGTCCAGCCAAGTATTTTATTTTTTCTTAGCAAAAAAAAAA
AAA
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