EY660292

Overview
NameEY660292
Unique NameEY660292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660292 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.917e-43
Identity = 106/194 (54.64%), Postives = 130/194 (67.01%), Query Frame = 2
Query:  152 SVVAARVTGIR-KSGVYQFSSVK--YLPGTLQRNVSLSVRCMAKNELQKDQS--------------------TQPPKLPRISTKFSDVFAFCGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLGALAVTEFVKGSTLV 664
            S+++  +T I  +S V QF+++   Y+P TL+RNVSL VR MA+ E  K+QS                    T+PPK+   STKFSD+ AF GPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT          P F+GVSVESKS   M+SDAE WNGR AM+GL ALA TEFVKG++LV
Sbjct:    8 SIMSNSMTNISSRSRVNQFTNIPSVYIP-TLRRNVSLKVRSMAEGE-PKEQSKVAVDPTTPTASTPTPQPAYTRPPKM---STKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of EY660292 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.522e-32
Identity = 75/159 (47.17%), Postives = 105/159 (66.04%), Query Frame = 2
Query:  233 LQRNVSLSVRCMAKNELQKDQSTQP------------PKLPRISTKFS-DVFAFCGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLGALAVTEFVKGSTLVLV 670
            ++RN   +VR M ++  +++Q  Q             P    ++TK + D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T          P+++G+S E+K++GF  SDAE+WNGRFAM+GL ALA TE+VKG  L+ V
Sbjct:   41 MRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLINV 199          
BLAST of EY660292 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 69/158 (43.67%), Postives = 90/158 (56.96%), Query Frame = 2
Query:  203 FSSVKYLP-GTLQRNVSLSVRCMAKNELQKDQSTQPPKLPRISTKFSDVFAFCGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLGALAVTEFVKGSTLVLV 670
            F+    LP G+ +   +L  R +      +  +  PP  P+ ST   D  AF GPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GL ALA TE + G+  + V
Sbjct:   10 FAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFINV 167          
BLAST of EY660292 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.068e-28
Identity = 66/142 (46.48%), Postives = 83/142 (58.45%), Query Frame = 2
Query:  248 SLSVRCMAKNELQKDQSTQPPKLPRISTKFSDVFAFCGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLGALAVTEFVKGSTLVLV 670
            +L  R +      +  S  PP  P+ ST   D  AF GPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GL ALA TE + G+  + V
Sbjct:   31 ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFINV 172          
BLAST of EY660292 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 68/129 (52.71%), Postives = 83/129 (64.34%), Query Frame = 2
Query:  299 TQPPKLPRISTKFS-----DVFAFCGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLGALAVTEFVKGSTLV 664
            T  P  P+  TK +     D  AF GPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T          PL +G SVESKS G  ++DAELWNGRFAM+GL ALA TEF+ G+  V
Sbjct:  101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of EY660292 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.279e-14
Identity = 60/162 (37.04%), Postives = 75/162 (46.30%), Query Frame = 2
Query:  206 SSVKYLPGTLQRNVSLSVRCMAKNELQKDQSTQPPKLPR--------ISTKFSDVFAFCGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSD--GFMTSDAELWNGRFAMMGLGALAVTEFVKGSTL 661
            +S+   P  L R  +    C      + + ST PP  P          +   ++V  F G APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T          P F       K D  G  T DAE+ NGRFAM+G  A+ V E ++G  L
Sbjct:   16 ASINVRPAPLLRTAAPKRVCKHIVRAENNPSTPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171          
The following BLAST results are available for this feature:
BLAST of EY660292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.917e-4354.64Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.522e-3247.17Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI6_HORVU2.971e-2843.67Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU5.068e-2846.48Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU8.645e-2852.71High molecular mass early light-inducible protein ... [more]
CBR_DUNBA9.279e-1437.04Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660292 ID=EY660292; Name=EY660292; organism=Citrus sinensis; type=EST; length=754bp
TCTGGTACCCTGCGGTACCTGTCCGGAATTCTTCAAAAAAAGGCGTCCGG
NAAGGACCTTTCAACAGAAGACTTCAGNTGCTAAATTATTCCTCCGTTGC
ATAATCTACAATTGGGTCGATAAAATAGCTTTTCAATCTATGCTTGGAAG
CTCTGTCGTCGCAGCTCGTGTTACCGGCATCAGGAAATCTGGGGTGTACC
AATTTTCCTCTGTTAAGTACTTACCTGGTACTCTGCAGAGAAATGTTAGC
TTATCAGTGCGCTGCATGGCTAAGAATGAGCTGCAGAAGGATCAATCAAC
TCAGCCACCAAAGCTTCCGCGTATAAGCACGAAGTTCTCTGACGTGTTTG
CGTTCTGTGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATT
GGGTTCGTGGCTGCATTGGCGGTGGAGCTATCCAAGGGTCAGGATGTGTT
TGCCCAGTTATCAGACGGTGGAGTTGCCTGGTTCTTGGGGACCAGTGTTC
TGCTTTCGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAG
TCTAAATCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAATGGGAG
GTTCGCTATGATGGGTCTTGGTGCTTTGGCTGTCACTGAGTTTGTTAAAG
GCAGTACCCTTGTTTTAGTAAGTCCATTTTTCCATGATATGCNGACTGCA
GAGTCTTGGAATGATTACAAGACCCTATTTCTTTTTAAAAAAAAAAAAAA
AAAA
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