EY660235

Overview
NameEY660235
Unique NameEY660235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660235 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 57/157 (36.31%), Postives = 80/157 (50.96%), Query Frame = 2
Query:   77 HKSIIYGVWASSSSGNKKLDAAYCEG*EKQEPC*EDCFFSAGASDQECGVGEMFGPDDYEKSEDYWQQGEGSGLVRLKWYRIEDVPKKGGRHIALENSENMPGTNCRETREVRLEDRVEMWKLCQNYETDMLVRDDYDFDGYRRKAMRGRQAGRQGK 547
            H+SI Y +W S+  GNK+LDAAY     K         FS   S   CGV EM    DY      W Q +  G   ++W  ++DVP    RHI LEN+EN P TN R+T+EV LE   ++ K+  +Y+    + DD+     R++     +  RQG+
Sbjct:  424 HRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVY---LLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGR 577          
BLAST of EY660235 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 57/157 (36.31%), Postives = 80/157 (50.96%), Query Frame = 2
Query:   77 HKSIIYGVWASSSSGNKKLDAAYCEG*EKQEPC*EDCFFSAGASDQECGVGEMFGPDDYEKSEDYWQQGEGSGLVRLKWYRIEDVPKKGGRHIALENSENMPGTNCRETREVRLEDRVEMWKLCQNYETDMLVRDDYDFDGYRRKAMRGRQAGRQGK 547
            H+SI Y +W S+  GNK+LDAAY     K         FS   S   CGV EM    DY      W Q +  G   ++W  ++DVP    RHI LEN+EN P TN R+T+EV LE   ++ K+  +Y+    + DD+     R++     +  RQG+
Sbjct:  424 HRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVY---LLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGR 577          
BLAST of EY660235 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 57/157 (36.31%), Postives = 80/157 (50.96%), Query Frame = 2
Query:   77 HKSIIYGVWASSSSGNKKLDAAYCEG*EKQEPC*EDCFFSAGASDQECGVGEMFGPDDYEKSEDYWQQGEGSGLVRLKWYRIEDVPKKGGRHIALENSENMPGTNCRETREVRLEDRVEMWKLCQNYETDMLVRDDYDFDGYRRKAMRGRQAGRQGK 547
            H+SI Y +W S+  GNK+LDAAY     K         FS   S   CGV EM    DY      W Q +  G   ++W  ++DVP    RHI LEN+EN P TN R+T+EV LE   ++ K+  +Y+    + DD+     R++     +  RQG+
Sbjct:  425 HRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVY---LLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGR 578          
BLAST of EY660235 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.837e-20
Identity = 53/137 (38.69%), Postives = 73/137 (53.28%), Query Frame = 2
Query:   77 HKSIIYGVWASSSSGNKKLDAAYCEG*EKQEPC*EDCFFSAGASDQECGVGEMFGPDDYEKSEDYWQQGEGSGLVRLKWYRIEDVPKKGGRHIALENSENMPGTNCRETREVRLEDRVEMWKLCQNYETDMLVRDDY 487
            H+SI Y +W S+  GNK+LD A+     K         FS   S   CGV EM  P DY  S   W Q +  G   +KW  ++DVP    RHI LEN++N P TN R+T+EV LE   ++ K+  +Y+    + DD+
Sbjct:  403 HRSIKYSIWCSTEHGNKRLDGAFRSMSSKGPVY---LLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDF 536          
BLAST of EY660235 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.458e-19
Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 2
Query:   77 HKSIIYGVWASSSSGNKKLDAAY-CEG*EKQEPC*EDCFFSAGASDQECGVGEMFGPDDYEKSEDYWQQGEGSGLVRLKWYRIEDVPKKGGRHIALENSENMPGTNCRETREVRLEDRVEMWKLCQNYETDMLVRDDY 487
            H+SI Y +W S+  GNK+LD+A+ C     + P      FS   S   CGV EM  P DY  S   W Q +  G   ++W  ++DVP    RHI LEN++N P TN R+T+EV LE   ++ K+  +Y+    + DD+
Sbjct:  403 HRSIKYSIWCSTEHGNKRLDSAFRCMS--SKGPV--YLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDF 536          
BLAST of EY660235 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.540e-19
Identity = 56/159 (35.22%), Postives = 80/159 (50.31%), Query Frame = 2
Query:   77 HKSIIYGVWASSSSGNKKLDAAYCEG*EKQEPC*EDCFFSAGASDQECGVGEMFGPDDYEKSEDYWQQGEGSGLVRLKWYRIEDVPKKGGRHIALENSENMPGTNCRETREVRLEDRVEMWKLCQNYETDMLVRDDY--------DFDGYRRKAMRGRQ 529
            H+SI Y +W S+  GNK+LDAAY      + P      FS   S   CGV EM    DY      W Q +  G   +KW  ++DVP    RHI LEN++N P TN R+T+EV LE   ++ K+   ++    + DD+        + +  RR+  R +Q
Sbjct:  430 HRSIKYSIWCSTEHGNKRLDAAY-RSLNGKGPL--YLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNKQ 585          
BLAST of EY660235 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.540e-19
Identity = 56/159 (35.22%), Postives = 80/159 (50.31%), Query Frame = 2
Query:   77 HKSIIYGVWASSSSGNKKLDAAYCEG*EKQEPC*EDCFFSAGASDQECGVGEMFGPDDYEKSEDYWQQGEGSGLVRLKWYRIEDVPKKGGRHIALENSENMPGTNCRETREVRLEDRVEMWKLCQNYETDMLVRDDY--------DFDGYRRKAMRGRQ 529
            H+SI Y +W S+  GNK+LDAAY      + P      FS   S   CGV EM    DY      W Q +  G   +KW  ++DVP    RHI LEN++N P TN R+T+EV LE   ++ K+   ++    + DD+        + +  RR+  R +Q
Sbjct:  430 HRSIKYSIWCSTEHGNKRLDAAY-RSLNGKGPL--YLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNKQ 585          
BLAST of EY660235 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.540e-19
Identity = 56/159 (35.22%), Postives = 80/159 (50.31%), Query Frame = 2
Query:   77 HKSIIYGVWASSSSGNKKLDAAYCEG*EKQEPC*EDCFFSAGASDQECGVGEMFGPDDYEKSEDYWQQGEGSGLVRLKWYRIEDVPKKGGRHIALENSENMPGTNCRETREVRLEDRVEMWKLCQNYETDMLVRDDY--------DFDGYRRKAMRGRQ 529
            H+SI Y +W S+  GNK+LDAAY      + P      FS   S   CGV EM    DY      W Q +  G   +KW  ++DVP    RHI LEN++N P TN R+T+EV LE   ++ K+   ++    + DD+        + +  RR+  R +Q
Sbjct:  430 HRSIKYSIWCSTEHGNKRLDAAY-RSLNGKGPL--YLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNKQ 585          
The following BLAST results are available for this feature:
BLAST of EY660235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YTHD2_MACFA1.319e-2036.31YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN1.319e-2036.31YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN1.319e-2036.31YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD1_MOUSE3.837e-2038.69YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YTHD1_HUMAN1.458e-1938.41YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
YTHD3_PONAB5.540e-1935.22YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE5.540e-1935.22YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN5.540e-1935.22YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-A04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660235 ID=EY660235; Name=EY660235; organism=Citrus sinensis; type=EST; length=883bp
CAGAGGGTTAGAGAGNGGCACAGAGTACGAAGACGCAAAGAAAAAGATTT
GTAACCANAAGAAAGAGGTTAAGGGGCACAAGAGCATAATATATGGGGTG
TGGGCCAGCAGCTCAAGTGGTAACAAGAAGCTAGATGCTGCTTATTGTGA
AGGTTGAGAGAAGCAAGAGCCATGTTGAGAGGATTGCTTCTTTTCGGCTG
GTGCTAGTGATCAAGAGTGTGGTGTGGGTGAAATGTTTGGTCCTGATGAT
TATGAAAAGAGTGAGGATTACTGGCAGCAAGGAGAAGGGAGTGGGTTGGT
CCGTCTTAAATGGTATAGGATCGAAGATGTACCAAAAAAAGGAGGTCGGC
ACATTGCACTGGAAAATAGTGAGAACATGCCTGGAACTAACTGTCGGGAG
ACACGGGAGGTGAGATTGGAGGATCGCGTTGAGATGTGGAAACTCTGTCA
GAATTATGAAACCGATATGTTAGTACGGGATGATTATGATTTCGATGGAT
ATCGGCGGAAAGCCATGCGGGGAAGGCAGGCAGGACGGCAAGGTAAATAG
ATGGCTGTAGGGGGAGGTGGACAGAATGATCATGGAAAAGCAGGCCCCTG
TTCCAGTGAGTTTTTTAAGAGGGATGCCAAGAGCTTTGCTCAAGATGGCC
GCTTGGGAGAGGGCAAAAAGATGGGATGGGTGTAGAACAAGGTAATTTAG
CCTCGAGGAGCTCCATGGGTGGCGGAGGGAATATTTAAAGAGAAAATAAT
CGCGGGGGTTCGTGGTGGCTGTCGGGAAAAGGAGAATTTGGTGGGGGGGG
GAAACTCTGTTTTGGGGGGGAGAACTTGGATGCAAACCCGTGGGGATTTA
TTGGGGTTTTGAAGGGGGGGATCCGGGAAGAAC
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