EY660127

Overview
NameEY660127
Unique NameEY660127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.156e-51
Identity = 90/117 (76.92%), Postives = 105/117 (89.74%), Query Frame = 3
Query:   15 VRLEDSETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 365
            + L+  ETLSYLPPLSDEAL KEI +L+R+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISF+ AKPPGV
Sbjct:   64 IGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.946e-47
Identity = 84/114 (73.68%), Postives = 98/114 (85.96%), Query Frame = 3
Query:   21 LEDSETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            L+  ETLSYLPPLS E+L KE+ +LLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:   69 LKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.847e-47
Identity = 84/114 (73.68%), Postives = 98/114 (85.96%), Query Frame = 3
Query:   21 LEDSETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            L+  ETLSYLPPLS E+L KE+ +LLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:   69 LKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.025e-47
Identity = 85/110 (77.27%), Postives = 95/110 (86.36%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            ETLSYLP LS E LL EI +LL+SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:   70 ETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.025e-47
Identity = 83/116 (71.55%), Postives = 99/116 (85.34%), Query Frame = 3
Query:   15 VRLEDSETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            + ++  ETLSYLP LSDE LLKE+ +LL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   65 INMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.571e-47
Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 356
            ETLSYLP LSDE LLKEI +LL+ GW+PCLEFE E G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP
Sbjct:   70 ETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.119e-46
Identity = 83/109 (76.15%), Postives = 94/109 (86.24%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 359
            ETLSYLP L D  L KE+ +LLR GWIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   68 ETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.119e-46
Identity = 84/116 (72.41%), Postives = 98/116 (84.48%), Query Frame = 3
Query:   15 VRLEDSETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            + ++  ETLSYLP LSDE LL EI +LL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:   64 INMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.119e-46
Identity = 84/116 (72.41%), Postives = 98/116 (84.48%), Query Frame = 3
Query:   15 VRLEDSETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            + ++  ETLSYLP LSDE LL EI +LL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:   64 INMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.119e-46
Identity = 82/116 (70.69%), Postives = 99/116 (85.34%), Query Frame = 3
Query:   15 VRLEDSETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            + ++  ETLSYLP L+DE LLKE+ +LL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   65 INMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
The following BLAST results are available for this feature:
BLAST of EY660127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS_LACSA1.156e-5176.92Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY2.946e-4773.68Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP3.847e-4773.68Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL5.025e-4777.27Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS3_SOLTU5.025e-4771.55Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_CAPAN8.571e-4777.78Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA1.119e-4676.15Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3B_SOLLC1.119e-4672.41Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC1.119e-4672.41Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS1_SOLTU1.119e-4670.69Ribulose bisphosphate carboxylase small chain 1, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660127 ID=EY660127; Name=EY660127; organism=Citrus sinensis; type=EST; length=909bp
CAAAGACCGCGCGCGTCCGGCTTGAAGATTCCGAGACTCTCTCATACCTC
CCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCACTCACCTTCTCCG
CTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGT
ACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACA
ATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAA
GGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTA
TCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCC
AAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGC
AATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCA
ATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTG
CTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTATATA
TATTTTAATAATTGAATCCTTTGTTTTCAGTTTCATTAAAAAAAAAAAAA
AAAAAAAAGGGGGGCCCCCCATAAGGGGTCAAGATGTCGAACCCCCGGGA
GGCGGCGCCCCATATCTTTTATAAGGGCCCCCATAATATAATTAACTGGG
CGGCGCGTTTAAAAAACGTGGGGGGGGGGAGAACCCCCGGGGTGACCCCA
TTTTATAGCGTTTCACGAAAACCCCCTTTCTCCGCCGGGGGGTAATAAGC
AAAAGGGCGGCCAGATACCCTCTTCCCACAATTGCGCAACCAAAAAGAGA
AATAGAAACCCGCCCTCACGGGAGATTACAACTGGGGGGGGGGGGGAACC
CCACCCCTG
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