EY660114

Overview
NameEY660114
Unique NameEY660114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660114 vs. ExPASy Swiss-Prot
Match: RH41_ARATH (DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis thaliana GN=RH41 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.660e-50
Identity = 98/139 (70.50%), Postives = 123/139 (88.49%), Query Frame = 2
Query:   17 SKHHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRPFLVGEVPVIVATGILGQGVELLGVRLVIIFDMPNSIKEYVHQIGRASQMG*EGTAIVFVNEENKNLIREMGDILKSSGACIPQELIN 433
            S++HF PPAVVYV SR+GADLL+NAI+V TG+KALSIHGEKPMKERR++M  FL GEVPV+V+TG+LG+GV+LL VR VI+FDMP++IKEY+H IGRAS+MG +GTAIVFVNE+++NL  ++   LKSSGA IP+ELIN
Sbjct:  352 SQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKELIN 490          
BLAST of EY660114 vs. ExPASy Swiss-Prot
Match: RH41_ORYSJ (DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica GN=Os02g0201900 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 2.168e-50
Identity = 98/143 (68.53%), Postives = 120/143 (83.92%), Query Frame = 2
Query:   17 SKHHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRPFLVGEVPVIVATGILGQGVELLGVRLVIIFDMPNSIKEYVHQIGRASQMG*EGTAIVFVNEENKNLIREMGDILKSSGACIPQELINSRYT 445
            SK HF PPAVV+V SR+GADLLS AI+V TG+K +SIHG+K M ERRE +R FL GEV V+V TG+LG+G++LL VR VI+FDMPNSI EYVHQ+GRAS+MG EG AIVFVNEE++NL RE+  ILK++GA IP+EL NS+YT
Sbjct:  378 SKQHFKPPAVVFVSSRIGADLLSEAITVATGLKVVSIHGDKTMNERRESLRRFLTGEVSVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNEEDRNLFRELVQILKTAGAPIPRELANSKYT 520          
BLAST of EY660114 vs. ExPASy Swiss-Prot
Match: DDX59_HUMAN (Probable ATP-dependent RNA helicase DDX59 OS=Homo sapiens GN=DDX59 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.845e-34
Identity = 68/141 (48.23%), Postives = 101/141 (71.63%), Query Frame = 2
Query:   20 KHHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRPFLVGEVPVIVATGILGQGVELLGVRLVIIFDMPNSIKEYVHQIGRASQMG*EGTAIVFVNEENKNLIREMGDILKSSGACIPQELINSRY 442
            K  F PP +V+V  +LGADLLS A+   TG+K++SIH EK   ER+ I++  L G+  V+V+TG+LG+G++L+ VRLV+ FDMP+S+ EYVHQIGR  ++G  GTAI F+N  +K L  ++   +K +G+ +P +L+NS Y
Sbjct:  440 KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLNSPY 580          
BLAST of EY660114 vs. ExPASy Swiss-Prot
Match: DDX59_RAT (Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus GN=Ddx59 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.337e-34
Identity = 67/138 (48.55%), Postives = 99/138 (71.74%), Query Frame = 2
Query:   29 FTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRPFLVGEVPVIVATGILGQGVELLGVRLVIIFDMPNSIKEYVHQIGRASQMG*EGTAIVFVNEENKNLIREMGDILKSSGACIPQELINSRY 442
            F PP +V+V  +LGADLLS A+   TG+ + SIH EK   ERREI++  L G+  V+V+TGILG+G++L+ V+LV+ FDMP+S+ EYVHQ+GR  ++G  GTAI F+N  +K L  ++   +K +G+ +P +L+NS Y
Sbjct:  413 FKPPVLVFVDCKLGADLLSEAVQKITGLSSTSIHSEKSQVERREILKGLLEGDYEVVVSTGILGRGLDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPTGSILPPQLLNSPY 550          
BLAST of EY660114 vs. ExPASy Swiss-Prot
Match: DDX59_MOUSE (Probable ATP-dependent RNA helicase DDX59 OS=Mus musculus GN=Ddx59 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.408e-33
Identity = 65/138 (47.10%), Postives = 99/138 (71.74%), Query Frame = 2
Query:   29 FTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRPFLVGEVPVIVATGILGQGVELLGVRLVIIFDMPNSIKEYVHQIGRASQMG*EGTAIVFVNEENKNLIREMGDILKSSGACIPQELINSRY 442
            F PP +V+V  +LGADLLS A+   TG+ + SIH EK   ERR+I++  L G+  V+V+TG+LG+G++L+ V+LV+ FDMP+S+ EYVHQ+GR  ++G  GTAI F+N  +K L  ++   +K +G+ +P +L+NS Y
Sbjct:  443 FKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPTGSILPPQLLNSPY 580          
BLAST of EY660114 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.208e-20
Identity = 53/135 (39.26%), Postives = 82/135 (60.74%), Query Frame = 2
Query:   44 VVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRPFLVGEVPVIVATGILGQGVELLGVRLVIIFDMPNSIKEYVHQIGRASQMG*EGTAIVFVNEENKNLIREMGDILKSSGACIPQELINSRYTA 448
            +V+V ++ GAD L N +  T G  A SIHG++  +ER   +R F  G  P++VAT +  +G+++  V  VI FD+PN I +YVH+IGR  + G  G A  F NE N +L R + ++++ +   +PQ L   RY+A
Sbjct:  437 LVFVETKRGADALENWL-YTNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNLSLARPLCELMQEANQEVPQWL--ERYSA 568          
BLAST of EY660114 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 52/135 (38.52%), Postives = 79/135 (58.52%), Query Frame = 2
Query:   44 VVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRPFLVGEVPVIVATGILGQGVELLGVRLVIIFDMPNSIKEYVHQIGRASQMG*EGTAIVFVNEENKNLIREMGDILKSSGACIPQELINSRYTA 448
            +V+V ++ GAD L N +    G  A SIHG++  +ER   +R F  G  P++VAT +  +G+++  V  VI FD+PN I +YVH+IGR  + G  G A  F NE N  L R + ++++ +   +PQ L   RY A
Sbjct:  432 LVFVETKRGADALENWL-YNNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTPLARPLSELMQEANQEVPQWL--ERYAA 563          
BLAST of EY660114 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.979e-19
Identity = 50/135 (37.04%), Postives = 81/135 (60.00%), Query Frame = 2
Query:   44 VVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRPFLVGEVPVIVATGILGQGVELLGVRLVIIFDMPNSIKEYVHQIGRASQMG*EGTAIVFVNEENKNLIREMGDILKSSGACIPQELINSRYTA 448
            +V+V ++ GAD L + + +  G  A SIHG++  +ER   +R F  G  P++VAT +  +G+++  V  V+ FD+PN I +YVH+IGR  + G  G A  F NE N ++ R + ++++ S   +P  L  SRY A
Sbjct:  420 LVFVETKRGADSLEHWLCMN-GFPATSIHGDRNQQEREYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSMARSLAELMQESNQEVPAWL--SRYAA 551          
BLAST of EY660114 vs. ExPASy Swiss-Prot
Match: DDX3Y_PONAB (ATP-dependent RNA helicase DDX3Y OS=Pongo abelii GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.979e-19
Identity = 49/133 (36.84%), Postives = 82/133 (61.65%), Query Frame = 2
Query:   44 VVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRPFLVGEVPVIVATGILGQGVELLGVRLVIIFDMPNSIKEYVHQIGRASQMG*EGTAIVFVNEENKNLIREMGDILKSSGACIPQELINSRY 442
            +V+V ++ GAD L + +    G    SIHG++  ++R E +  F  G+ P++VAT +  +G+++  VR VI FD+P+ I+EYVH+IGR  ++G  G A  F NE+N N+ +++ D+L  +   +P  L N  Y
Sbjct:  443 LVFVETKKGADSLEDFL-YHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMAY 574          
BLAST of EY660114 vs. ExPASy Swiss-Prot
Match: DDX3Y_HUMAN (ATP-dependent RNA helicase DDX3Y OS=Homo sapiens GN=DDX3Y PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.979e-19
Identity = 49/133 (36.84%), Postives = 82/133 (61.65%), Query Frame = 2
Query:   44 VVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRPFLVGEVPVIVATGILGQGVELLGVRLVIIFDMPNSIKEYVHQIGRASQMG*EGTAIVFVNEENKNLIREMGDILKSSGACIPQELINSRY 442
            +V+V ++ GAD L + +    G    SIHG++  ++R E +  F  G+ P++VAT +  +G+++  VR VI FD+P+ I+EYVH+IGR  ++G  G A  F NE+N N+ +++ D+L  +   +P  L N  Y
Sbjct:  443 LVFVETKKGADSLEDFL-YHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMAY 574          
The following BLAST results are available for this feature:
BLAST of EY660114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 362
Match NameE-valueIdentityDescription
RH41_ARATH1.660e-5070.50DEAD-box ATP-dependent RNA helicase 41 OS=Arabidop... [more]
RH41_ORYSJ2.168e-5068.53DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sa... [more]
DDX59_HUMAN2.845e-3448.23Probable ATP-dependent RNA helicase DDX59 OS=Homo ... [more]
DDX59_RAT6.337e-3448.55Probable ATP-dependent RNA helicase DDX59 OS=Rattu... [more]
DDX59_MOUSE2.408e-3347.10Probable ATP-dependent RNA helicase DDX59 OS=Mus m... [more]
RH37_ORYSJ5.208e-2039.26DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sa... [more]
RH52B_ORYSJ1.160e-1938.52DEAD-box ATP-dependent RNA helicase 52B OS=Oryza s... [more]
RH52C_ORYSJ1.979e-1937.04DEAD-box ATP-dependent RNA helicase 52C OS=Oryza s... [more]
DDX3Y_PONAB1.979e-1936.84ATP-dependent RNA helicase DDX3Y OS=Pongo abelii G... [more]
DDX3Y_HUMAN1.979e-1936.84ATP-dependent RNA helicase DDX3Y OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660114 ID=EY660114; Name=EY660114; organism=Citrus sinensis; type=EST; length=904bp
CCACGCGTCCGTGATGAGCAAGCACCATTTTACTCCACCGGCTGTAGTCT
ATGTGGGTTCAAGACTTGGGGCTGATCTCCTGTCTAATGCAATTTCAGTC
ACTACAGGGATGAAAGCCTTATCAATTCATGGGGAGAAGCCCATGAAGGA
GAGAAGAGAAATAATGAGGCCATTTTTAGTGGGAGAAGTCCCTGTGATTG
TGGCCACGGGGATTTTGGGTCAAGGAGTTGAACTCTTGGGTGTGAGGCTG
GTTATCATATTTGACATGCCCAATTCTATCAAGGAGTATGTCCATCAAAT
AGGTAGGGCTTCTCAAATGGGATAGGAGGGTACAGCAATTGTATTTGTGA
ATGAGGAGAATAAGAATTTGATTCGGGAGATGGGTGATATTTTAAAATCT
TCTGGAGCATGTATACCTCAAGAACTTATTAATTCACGATATACAGCTGG
CTCATTCTCATCTGGCAAGGGCTTTAAAAAGAGGAAACGCTGAAGTTTTA
TGAGAGATGCCGGTTTCCCTATTTTTCAATTCACCCTCTTGAAAAATGGC
AAATATTAAGTTTTAGGAAATGCTGAATGAGGATTCCTTCTGTACCTTCA
TGCATTGATAGATTGACTGTTGCTAACGAGAACAGTTGCTTGCCCACAAC
TAACACGTGGTTGACATGTCGGCATATTAATATGGTGGAATGCCCCCGTC
ATATATTCAGATGGCTTTCAACTGAGCTACGCTTGTGCCTGACTGCCTAG
CTTTAATTTTTCTTCAGCAGCTAATTGATCTACTGAATTTGCAGTTCGGT
TAATGACATTTTGCTATATTCTTGGTAGAGAATGACCAAGTCACCGTCGA
TGGATGCCACCTGGTGCAAAGATGAATGACAGATAATGCACTATCATAGC
ATGT
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