EY660074
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.524e-59 Identity = 128/195 (65.64%), Postives = 139/195 (71.28%), Query Frame = 2 Query: 311 QVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ER 883 QVIRM KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA+GDVP+TIEGK+VITLDMGLLVAGT E+L+K+ E IKQSDEI LFIDEVHTL L+ +LA G++QCIG TLDEY E+ Sbjct: 227 QVIRMVGESNEAVGASVGGGTSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLME---EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEK 418 HSP 2 Score: 78.5666 bits (192), Expect = 5.704e-14 Identity = 41/56 (73.21%), Postives = 42/56 (75.00%), Query Frame = 1 Query: 1 PRVRRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQ 168 PR +RVLELSLEEARQLGHNYIGS VAARVLENLGADPSNIRTQ Sbjct: 172 PRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQ 227
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 3.395e-59 Identity = 127/195 (65.13%), Postives = 139/195 (71.28%), Query Frame = 2 Query: 311 QVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ER 883 QVIRM NK PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA+GDVP+TIEGK+VITLDMGLLVAGT E+L+K+ E IKQSD+I LFIDEVHTL L+ +LA G++QCIG TLDEY E+ Sbjct: 227 QVIRMVGESADSVTATVGSGSSNNKTPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLME---EIKQSDDIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEK 418 HSP 2 Score: 75.0998 bits (183), Expect = 6.306e-13 Identity = 39/56 (69.64%), Postives = 41/56 (73.21%), Query Frame = 1 Query: 1 PRVRRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQ 168 PR +RVLELS EEARQLGHNYIGS VAARVLENLGADP+NIRTQ Sbjct: 172 PRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQ 227
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 2.874e-58 Identity = 127/195 (65.13%), Postives = 138/195 (70.77%), Query Frame = 2 Query: 311 QVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ER 883 QVIRM KMPTLEEYGTNLTKLAEEGKLDPVVGRQ QIERV QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA+GDVP+TIEGK+VITLDMGLLVAGT E+L+K+ E IKQSDEI LFIDEVHTL L+ +LA G++QCIG TLDEY E+ Sbjct: 229 QVIRMVGESSEAVGASVGGGTSGLKMPTLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLME---EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEK 420 HSP 2 Score: 77.411 bits (189), Expect = 1.271e-13 Identity = 40/56 (71.43%), Postives = 42/56 (75.00%), Query Frame = 1 Query: 1 PRVRRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQ 168 PR +RVLELSLEEARQLGHNYIGS VAARVLENLGADP+NIRTQ Sbjct: 174 PRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQ 229
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 2.690e-56 Identity = 120/172 (69.77%), Postives = 131/172 (76.16%), Query Frame = 2 Query: 380 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ER 883 NKMPTLEEYGTNLTKLAEEGKLDPVVGR PQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASG V +T EGK+VITLDMGLL AGT E+++K+ E IKQSDEI LFIDEVHTL L+ +LA G++QCIG TLDEY E+ Sbjct: 199 NKMPTLEEYGTNLTKLAEEGKLDPVVGRHPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGVVRETSEGKKVITLDMGLLAAGTKYRGEFEERVKKLME---EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEK 367 HSP 2 Score: 78.5666 bits (192), Expect = 5.704e-14 Identity = 41/56 (73.21%), Postives = 42/56 (75.00%), Query Frame = 1 Query: 1 PRVRRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQ 168 PR +RVLELSLEEARQLGHNYIGS VAARVLENLGADPSNIRTQ Sbjct: 122 PRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQ 177
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 1.338e-47 Identity = 103/174 (59.20%), Postives = 126/174 (72.41%), Query Frame = 2 Query: 380 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ERSA 889 +K+PTLEE+GTNLT++A EGKLDPVVGR +IERVVQILGRRTKNNP LIGEPGVGKTAIAEGLAQRI + +VPDT+E K+VITLD+ LLVAGT E+L+KI + I+ +D + L IDEVHTL L+ +LA G++QCIG TL+EY E+ A Sbjct: 188 SKVPTLEEFGTNLTQMAVEGKLDPVVGRAKEIERVVQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIINNEVPDTLEDKKVITLDVSLLVAGTKYRGEFEERLKKIMD---EIRMADNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLEEYRKHIEKDA 358
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 7.342e-46 Identity = 101/172 (58.72%), Postives = 123/172 (71.51%), Query Frame = 2 Query: 380 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ER 883 +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNNP LIGEPGVGKTAIAEGLAQRIA+ DVP +E K VITLD+GLLVAGT E+L++I + IK +D + L IDEVHTL L+ +LA G++QCIG TL+EY E+ Sbjct: 160 SKTPTLEEFGSNLTQMAMEGGLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMD---EIKSADNVILVIDEVHTLIGAGAAEGAIDAANLLKPALARGELQCIGATTLEEYRKHIEK 328
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 9.589e-46 Identity = 101/172 (58.72%), Postives = 123/172 (71.51%), Query Frame = 2 Query: 380 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ER 883 +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNNP LIGEPGVGKTAIAEGLAQRIA+ DVP +E K VITLD+GLLVAGT E+L++I + IK +D + L IDEVHTL L+ +LA G++QCIG TL+EY E+ Sbjct: 160 SKTPTLEEFGSNLTQMAIEGGLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMD---EIKSADNVILVIDEVHTLIGAGAAEGAIDAANLLKPALARGELQCIGATTLEEYRKHIEK 328
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.636e-45 Identity = 99/173 (57.23%), Postives = 123/173 (71.10%), Query Frame = 2 Query: 383 KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ERSA 889 K PTLEE+G+NLT+ A EGKLDPV+GRQ +IERV+QILGRRTKNNP LIGEPGVGKTAIAEGLAQRI + DVPD +E K V+TLD+GLLVAGT E+L+KI + I+ ++ + L IDEVHTL L+ +LA G++QCIG TL+EY E+ + Sbjct: 158 KTPTLEEFGSNLTQKAAEGKLDPVIGRQKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRINNRDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIID---EIRVANNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGEMQCIGATTLEEYRKHIEKDS 327
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 7.111e-41 Identity = 89/171 (52.05%), Postives = 115/171 (67.25%), Query Frame = 2 Query: 389 PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ERSA 889 PTL+ +LT A+EGK+DPV+GR +IERV+Q+L RRTKNNP LIGEPGVGKTA+AEGLAQ+I +VP+T+ K V+TLDMG +VAGT ++L+K+ E I+Q+ I LFIDE+HTL L+ SLA G++QCIG TLDEY E+ A Sbjct: 164 PTLDSLARDLTVSAKEGKIDPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAVAEGLAQQIIDNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVME---EIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDA 331
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 2.069e-40 Identity = 87/174 (50.00%), Postives = 116/174 (66.67%), Query Frame = 2 Query: 380 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ERSA 889 N PTL+ +LT +A++G LDPV+GR +I RV+++L RRTKNNP LIGEPGVGKTAIAEGLAQ I + +VP+T++GK V++LDMG +VAGT E+L+K+ E I Q+ + LFIDE+HTL L+ +LA G++QCIG TLDEY E+ A Sbjct: 158 NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVME---EIHQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDA 328 The following BLAST results are available for this feature:
BLAST of EY660074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 194
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Sequences
The
following sequences are available for this feature:
EST sequence >EY660074 ID=EY660074; Name=EY660074; organism=Citrus sinensis; type=EST; length=921bpback to top |