EY660074

Overview
NameEY660074
Unique NameEY660074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.524e-59
Identity = 128/195 (65.64%), Postives = 139/195 (71.28%), Query Frame = 2
Query:  311 QVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ER 883
            QVIRM                   KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA+GDVP+TIEGK+VITLDMGLLVAGT       E+L+K+ E    IKQSDEI LFIDEVHTL               L+ +LA G++QCIG  TLDEY    E+
Sbjct:  227 QVIRMVGESNEAVGASVGGGTSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLME---EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEK 418          

HSP 2 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 41/56 (73.21%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 PRVRRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQ 168
            PR +RVLELSLEEARQLGHNYIGS             VAARVLENLGADPSNIRTQ
Sbjct:  172 PRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQ 227          
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.395e-59
Identity = 127/195 (65.13%), Postives = 139/195 (71.28%), Query Frame = 2
Query:  311 QVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ER 883
            QVIRM                  NK PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA+GDVP+TIEGK+VITLDMGLLVAGT       E+L+K+ E    IKQSD+I LFIDEVHTL               L+ +LA G++QCIG  TLDEY    E+
Sbjct:  227 QVIRMVGESADSVTATVGSGSSNNKTPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLME---EIKQSDDIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEK 418          

HSP 2 Score: 75.0998 bits (183), Expect = 6.306e-13
Identity = 39/56 (69.64%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 PRVRRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQ 168
            PR +RVLELS EEARQLGHNYIGS             VAARVLENLGADP+NIRTQ
Sbjct:  172 PRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQ 227          
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.874e-58
Identity = 127/195 (65.13%), Postives = 138/195 (70.77%), Query Frame = 2
Query:  311 QVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ER 883
            QVIRM                   KMPTLEEYGTNLTKLAEEGKLDPVVGRQ QIERV QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA+GDVP+TIEGK+VITLDMGLLVAGT       E+L+K+ E    IKQSDEI LFIDEVHTL               L+ +LA G++QCIG  TLDEY    E+
Sbjct:  229 QVIRMVGESSEAVGASVGGGTSGLKMPTLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLME---EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEK 420          

HSP 2 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 40/56 (71.43%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 PRVRRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQ 168
            PR +RVLELSLEEARQLGHNYIGS             VAARVLENLGADP+NIRTQ
Sbjct:  174 PRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQ 229          
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.690e-56
Identity = 120/172 (69.77%), Postives = 131/172 (76.16%), Query Frame = 2
Query:  380 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ER 883
            NKMPTLEEYGTNLTKLAEEGKLDPVVGR PQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASG V +T EGK+VITLDMGLL AGT       E+++K+ E    IKQSDEI LFIDEVHTL               L+ +LA G++QCIG  TLDEY    E+
Sbjct:  199 NKMPTLEEYGTNLTKLAEEGKLDPVVGRHPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGVVRETSEGKKVITLDMGLLAAGTKYRGEFEERVKKLME---EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEK 367          

HSP 2 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 41/56 (73.21%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 PRVRRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQ 168
            PR +RVLELSLEEARQLGHNYIGS             VAARVLENLGADPSNIRTQ
Sbjct:  122 PRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQ 177          
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.338e-47
Identity = 103/174 (59.20%), Postives = 126/174 (72.41%), Query Frame = 2
Query:  380 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ERSA 889
            +K+PTLEE+GTNLT++A EGKLDPVVGR  +IERVVQILGRRTKNNP LIGEPGVGKTAIAEGLAQRI + +VPDT+E K+VITLD+ LLVAGT       E+L+KI +    I+ +D + L IDEVHTL               L+ +LA G++QCIG  TL+EY    E+ A
Sbjct:  188 SKVPTLEEFGTNLTQMAVEGKLDPVVGRAKEIERVVQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIINNEVPDTLEDKKVITLDVSLLVAGTKYRGEFEERLKKIMD---EIRMADNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLEEYRKHIEKDA 358          
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.342e-46
Identity = 101/172 (58.72%), Postives = 123/172 (71.51%), Query Frame = 2
Query:  380 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ER 883
            +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNNP LIGEPGVGKTAIAEGLAQRIA+ DVP  +E K VITLD+GLLVAGT       E+L++I +    IK +D + L IDEVHTL               L+ +LA G++QCIG  TL+EY    E+
Sbjct:  160 SKTPTLEEFGSNLTQMAMEGGLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMD---EIKSADNVILVIDEVHTLIGAGAAEGAIDAANLLKPALARGELQCIGATTLEEYRKHIEK 328          
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 9.589e-46
Identity = 101/172 (58.72%), Postives = 123/172 (71.51%), Query Frame = 2
Query:  380 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ER 883
            +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNNP LIGEPGVGKTAIAEGLAQRIA+ DVP  +E K VITLD+GLLVAGT       E+L++I +    IK +D + L IDEVHTL               L+ +LA G++QCIG  TL+EY    E+
Sbjct:  160 SKTPTLEEFGSNLTQMAIEGGLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMD---EIKSADNVILVIDEVHTLIGAGAAEGAIDAANLLKPALARGELQCIGATTLEEYRKHIEK 328          
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.636e-45
Identity = 99/173 (57.23%), Postives = 123/173 (71.10%), Query Frame = 2
Query:  383 KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ERSA 889
            K PTLEE+G+NLT+ A EGKLDPV+GRQ +IERV+QILGRRTKNNP LIGEPGVGKTAIAEGLAQRI + DVPD +E K V+TLD+GLLVAGT       E+L+KI +    I+ ++ + L IDEVHTL               L+ +LA G++QCIG  TL+EY    E+ +
Sbjct:  158 KTPTLEEFGSNLTQKAAEGKLDPVIGRQKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRINNRDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIID---EIRVANNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGEMQCIGATTLEEYRKHIEKDS 327          
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.111e-41
Identity = 89/171 (52.05%), Postives = 115/171 (67.25%), Query Frame = 2
Query:  389 PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ERSA 889
            PTL+    +LT  A+EGK+DPV+GR  +IERV+Q+L RRTKNNP LIGEPGVGKTA+AEGLAQ+I   +VP+T+  K V+TLDMG +VAGT       ++L+K+ E    I+Q+  I LFIDE+HTL               L+ SLA G++QCIG  TLDEY    E+ A
Sbjct:  164 PTLDSLARDLTVSAKEGKIDPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAVAEGLAQQIIDNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVME---EIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDA 331          
BLAST of EY660074 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.069e-40
Identity = 87/174 (50.00%), Postives = 116/174 (66.67%), Query Frame = 2
Query:  380 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKEVITLDMGLLVAGT----NIVEQLRKIEENYGRIKQSDEIFLFIDEVHTLXXXXXXXXXXXXXXXLEASLAPGKVQCIGCPTLDEYEST*ERSA 889
            N  PTL+    +LT +A++G LDPV+GR  +I RV+++L RRTKNNP LIGEPGVGKTAIAEGLAQ I + +VP+T++GK V++LDMG +VAGT       E+L+K+ E    I Q+  + LFIDE+HTL               L+ +LA G++QCIG  TLDEY    E+ A
Sbjct:  158 NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVME---EIHQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDA 328          
The following BLAST results are available for this feature:
BLAST of EY660074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPAB_SOLLC1.524e-5965.64ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PEA3.395e-5965.13ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC2.874e-5865.13ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA2.690e-5669.77ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA1.338e-4759.20ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE7.342e-4658.72ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU9.589e-4658.72ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH1.636e-4557.23ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_OCEIH7.111e-4152.05Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPC_STAS12.069e-4050.00ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-C03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660074 ID=EY660074; Name=EY660074; organism=Citrus sinensis; type=EST; length=921bp
CCACGCGTCCGGCGTGTCTTGGAGCTTTCTCTGGAGGAAGCCCGCCAGCT
GGGCCATAATTATATTGGGTCCGAGCATCTTCTCCTTGGGCTTCTTCGTG
AAGGGGAAGGTGTAGCAGCCCGTGTTCTTGAGAATTTAGGTGCTGACCCT
AGTAACATCCGCACACAGGCAAGCAACAGTTCTTATCATTTGTGTTCCAA
TCTGATTTTCTTTCCTCGAGACCTGTTTCATTGCTAGCTTTGTTAAATAA
AAAATTGATTTGATATTCTTAGTAAAAGATATAAATAGGCAAAGCTTTTG
TTGGAGTGAACAGGTTATTCGTATGGTTGGTGAGAGCACAGAAGCTGTTG
GCGCTGGTGTTGGAGGAGGAAGCAGTGGCAACAAGATGCCAACACTGGAG
GAGTATGGAACAAATTTGACTAAGCTAGCAGAGGAGGGAAAATTGGATCC
TGTTGTTGGGAGACAGCCACAAATAGAGCGTGTTGTCCAAATTTTGGGCC
GTCGAACTAAGAATAATCCATGTCTTATTGGAGAACCTGGTGTGGGTAAA
ACAGCAATTGCAGAAGGCCTTGCTCAACGGATTGCAAGTGGTGATGTTCC
TGATACCATTGAAGGAAAAGAAGTTATTACCCTGGATATGGGTCTTCTTG
TTGCGGGAACAAATATCGTGGAACAGTTGAGAAAGATTGAAGAAAACTAT
GGGAGAATCAAACAGAGTGATGAAATATTTCTATTCATTGATGAGGTGCA
CACTTTAATCGGCGCAGGAGCAGCAGAAGGGGCTATTGATGCTGCTAACA
TCCTGGAAGCATCTCTTGCCCCAGGAAAAGTACAGTGTATTGGGTGCCCA
ACACTAGATGAATATGAAAGCACTTGAGAAAGATCAGCATTAAAAGACGA
TTCCAGCAGGTAAGTGCCGAA
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