EY660044

Overview
NameEY660044
Unique NameEY660044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660044 vs. ExPASy Swiss-Prot
Match: NUB1_MOUSE (NEDD8 ultimate buster 1 OS=Mus musculus GN=Nub1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 3.033e-25
Identity = 76/259 (29.34%), Postives = 126/259 (48.65%), Query Frame = 2
Query:   62 LSQLGVKNNPKVLATRISVDEG---KSLMAEEE-------RSRRVARIKAAATALVNRHADGSLPVEDFNLELEDQNGEKVRFGSETDRRAMMMGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDRARNALTSAXAKFFQLQVADESLSLVMSMGFKEQDGKRALRIC 808
            L + GV +N K +   +   E    K+L  EEE       + RR+ R K     L  R      P     L++ +Q G  +R     +R+A+M+ +  H   ++ +KR  Y  AL  L   +  F  C  ++L+ VDN  +LQ+D+VWCYF L  +  L +A  +L  A++  +  +G++  R+  ++     E  L LR+ LL+G+  YHSG  + AR  L  A   F +L +    +  ++ +GF  Q+ +  LR C
Sbjct:  143 LEEQGVTHNVKAMVLELKQSEEDVRKNLQLEEEEQNEAELKERRIQRTKRGLEILAERAEMVVDPETMPYLDIANQTGRSLRI-PPAERKALMLAMGYHEKGRAFLKRKEYGIALPCLLDADRYFCECK-ELLDTVDNYAVLQLDIVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQGIQNYHSGNGEEAREYLNKARQLFKELYIDPSKVHNLLQLGFTAQEARLGLRAC 399          
BLAST of EY660044 vs. ExPASy Swiss-Prot
Match: NUB1_HUMAN (NEDD8 ultimate buster 1 OS=Homo sapiens GN=NUB1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.153e-24
Identity = 73/260 (28.08%), Postives = 128/260 (49.23%), Query Frame = 2
Query:   62 LSQLGVKNNPKVLATRISVDEG---KSLMAEEE-------RSRRVARIKAAATALVNRHADGSL-PVEDFNLELEDQNGEKVRFGSETDRRAMMMGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDRARNALTSAXAKFFQLQVADESLSLVMSMGFKEQDGKRALRIC 808
            L + GV +N K +   +   E    K+   EEE       + +++ R K     L  R A+  + P     L++ +Q G  +R    ++R+A+M+ +  H   ++ +KR  Y  AL  L   ++ F  C  ++L+ VDN  +LQ+D+VWCYF L  +  L +A  +L  A++  +  +G++  R+  ++     E  L LR+ LL+G+  YHSG    A   L  A   F +L +    +  ++ +GF  Q+ +  LR C
Sbjct:  142 LEEQGVAHNVKAMVLELKQSEEDARKNFQLEEEEQNEAKLKEKQIQRTKRGLEILAKRAAETVVDPEMTPYLDIANQTGRSIRI-PPSERKALMLAMGYHEKGRAFLKRKEYGIALPCLLDADKYFCECCRELLDTVDNYAVLQLDIVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQGIRNYHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLGLRAC 400          
The following BLAST results are available for this feature:
BLAST of EY660044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NUB1_MOUSE3.033e-2529.34NEDD8 ultimate buster 1 OS=Mus musculus GN=Nub1 PE... [more]
NUB1_HUMAN1.153e-2428.08NEDD8 ultimate buster 1 OS=Homo sapiens GN=NUB1 PE... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660044 ID=EY660044; Name=EY660044; organism=Citrus sinensis; type=EST; length=884bp
TCAAACCACGACGCGTCCGCAAAGTTCTTTCCGAAATCATGGTGGTGGCT
GTGATAGCAAATTAAGCCAATTGGGTGTCAAGAATAACCCCAAGGTTCTT
GCTACCCGTATCTCTGTTGATGAAGGCAAGTCACTCATGGCTGAAGAAGA
ACGCTCTCGTAGGGTTGCTCGAATCAAGGCAGCTGCTACAGCACTTGTTA
ATCGGCATGCAGATGGTTCCTTACCTGTCGAGGACTTCAATTTAGAACTT
GAAGATCAGAATGGGGAGAAAGTACGATTTGGATCAGAGACTGATCGGCG
GGCGATGATGATGGGACTGATGCTTCATGCAAATGCAAAGAGTCTTATCA
AGAGGCACATGTATAAGGATGCTTTGGAAGTGCTTACCATGGGAGAGGAG
GCTTTCTCTCTTTGCGATCCCAAGGTCCTTGAGTTTGTTGACAATGGCCC
ATTACTGCAAATAGACATGGTCTGGTGCTATTTCATGCTTCGAGACATCA
GCTGGCTTTCAGAGGCAGGAATACGCCTTCGAAAAGCTAGAGAAGGAATA
GAGCGTGCTCATGGGAAGGATTCTTCTCGTGTCAGACTGCTTCAGGCAGG
TCGCCATCCAGAGCTTGCATTACATTTGAGAATGGAGCTGCTGGAAGGAG
TGGCAGCATATCACAGTGGTCAGTTTGATAGGGCTCGGAATGCATTGACC
TCTGCACNAGCAAAATTCTTCCAGTTACAAGTGGCGGATGAAAGTTTATC
CCTGGTTATGAGCATGGGCTTCAAAGAACAAGATGGCAAGAGAGCATTGC
GAATATGCAGTCCAGGATGTCCGGAGGGCCATTGATTTCCCTTGGTGGAG
AGAAAGCCAAGAAGAGTTAGGGAAAGGGAGATAA
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