EY660036

Overview
NameEY660036
Unique NameEY660036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660036_ssr245 microsatellite EY660036_ssr245:245..256. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY660036 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 1.283e-76
Identity = 143/219 (65.30%), Postives = 167/219 (76.26%), Query Frame = 2
Query:  182 RPATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRXYKN--SGRAPFQ*TNPWGCIRRCGKQMTGHQKWSRE-IDWSKL-LFMLLRDFDIEACPVLNHKL-GLNPSNWGE 823
            RPATF+EDFK  WS++H+RQ+E G+AIQLVLDQ++GCGFASKR+YLFGRVSMKIKL+PGDSAGTVTAFYMNS+T  VRDELDFEFLGNR+GQPY+VQTNI+A+GKGDREQRVNLWFDP+ DYH YTILW+H HIVFYVDDVPIR YKN  +    +  + P G      +      +   E IDWSK   +   +DFDIE CPV        NP NW E
Sbjct:   31 RPATFVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGCPVPGPTFCPSNPHNWWE 249          
BLAST of EY660036 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 7.285e-72
Identity = 135/225 (60.00%), Postives = 164/225 (72.89%), Query Frame = 2
Query:  182 RPATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRXYKN--SGRAPFQ*TNPWGCIRRCGKQMTGHQKWS-----REIDWSKL-LFMLLRDFDIEACPVLN-HKLGLNPSNWGEAN 829
            RPA F +DF++ WSD H+ QI+GGRAIQL LD +SGCGFASK+QYLFGRVSMKIKL+PGDSAGTVTAFYMNS+T++VRDELDFEFLGNR+GQPYTVQTN++A+GKGDREQRVNLWFDP+ D+H Y I WNH  IVFYVD+VPIR YKN  + + P+    P G        +     W+      +I+WS+   +   +DFDIE CPV        N  NW E +
Sbjct:   30 RPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVY----STLWEADDWATRGGIEKINWSRAPFYAYYKDFDIEGCPVPGPADCPANSKNWWEGS 250          
BLAST of EY660036 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 4.202e-53
Identity = 86/145 (59.31%), Postives = 111/145 (76.55%), Query Frame = 2
Query:  194 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRXYKNS 628
            F ++++ +W+  H++ + GG  + LVLD++SG GF SK+ YLFG  SMK+KLV GDSAG VTAFY++SN     DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN   IV +VDDVPIR +KNS
Sbjct:   32 FWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNS 175          

HSP 2 Score: 35.039 bits (79), Expect = 4.202e-53
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 1
Query:  649 NQPMGVYPTLWEADDWA 699
            NQPM +Y +LW+ADDWA
Sbjct:  185 NQPMKIYSSLWDADDWA 201          
BLAST of EY660036 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.309e-53
Identity = 86/145 (59.31%), Postives = 110/145 (75.86%), Query Frame = 2
Query:  194 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRXYKNS 628
            F  ++  TW+  H++ + GG  + LVLD+ +G GF SK  YLFG  SM IK+V GDSAGTVTAFY++S      DE+DFEFLGNRTGQPY +QTN++  G G+REQR+NLWFDP+ DYH Y++LWN + IVF+VDDVPIR +KNS
Sbjct:   32 FGRNYFPTWAFDHIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSE-HDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNS 175          

HSP 2 Score: 37.3502 bits (85), Expect = 9.309e-53
Identity = 18/37 (48.65%), Postives = 23/37 (62.16%), Query Frame = 1
Query:  649 NQPMGVYPTLWEADDWAPE-VV*RNRLEQAPFYAITR 756
            NQPM +Y +LW ADDWA    + +   E+APF A  R
Sbjct:  185 NQPMKIYSSLWNADDWATRGGLEKTNWEKAPFVASYR 221          
BLAST of EY660036 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.921e-51
Identity = 83/145 (57.24%), Postives = 111/145 (76.55%), Query Frame = 2
Query:  194 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRXYKNS 628
            F ++++ +W+  H++ + GG    L+LD++SG GF SK+ YLFG  SMK++LV GDSAG VTAFY++SN     DE+DFEFLGNRTGQPY +QTN++  GKG+REQR+ LWFDP   YH Y++LWN + IV +VDDVPIR +KNS
Sbjct:   33 FWKNYEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNS 176          

HSP 2 Score: 35.039 bits (79), Expect = 2.921e-51
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 1
Query:  649 NQPMGVYPTLWEADDWA 699
            NQPM +Y +LW+ADDWA
Sbjct:  186 NQPMKIYSSLWDADDWA 202          
BLAST of EY660036 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.491e-49
Identity = 82/145 (56.55%), Postives = 109/145 (75.17%), Query Frame = 2
Query:  194 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRXYKNS 628
            F  ++  TW+  H +Q+ GG  +QL+LD+ +G GF SK  YLFG  SM IKL  GD+AG VTAFY++S T N  DE+DFEFLGNRTGQP  +QTN++  GKG+REQR+ LWFDP+  YH Y++LWN + IVF+VD++PIR +KN+
Sbjct:   34 FGRNYVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSS-TNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNA 177          

HSP 2 Score: 34.2686 bits (77), Expect = 4.491e-49
Identity = 20/41 (48.78%), Postives = 23/41 (56.10%), Query Frame = 1
Query:  649 NQPMGVYPTLWEADDWAPEVV*RNRLEQ-----APFYAITR 756
            NQPM +Y +LW ADDWA     R  LE+     APF A  R
Sbjct:  187 NQPMKLYSSLWNADDWAT----RGGLEKTNWANAPFIASYR 223          
BLAST of EY660036 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.080e-49
Identity = 100/200 (50.00%), Postives = 128/200 (64.00%), Query Frame = 2
Query:  194 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRXYKNSGRAPFQ*TNPWGCIRRCGKQMTGHQKWS-----REIDWSKLLFML-LRDFDIEAC 775
            F  ++  TW+  H++ + GG  IQL LD+ +G GF SK  YLFG  SM IKLVPGDSAGTVTAFY++S T    DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN + IVFYVDD PIR +KNS     +   P+    +    +     W+      + DWSK  F+   + F I+ C
Sbjct:   31 FGRNYVPTWAFDHIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSS-TNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVK--FPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGC 227          
BLAST of EY660036 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 5.855e-49
Identity = 78/145 (53.79%), Postives = 104/145 (71.72%), Query Frame = 2
Query:  194 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRXYKNS 628
            F E F +TW +      E G+ +   LD+ SG GF SK++YLFG++ MK+KLV G+SAGTVTA+Y++S      DE+DFEFLGNRTG PYT+ TN++  GKGDRE +  LWFDP AD+H YT+ WN  +I+F VD +PIR +KN+
Sbjct:   30 FYESFDITWGNGRANIFENGQLLTCTLDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSKG-TAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWNPVNIIFLVDGIPIRVFKNN 173          

HSP 2 Score: 37.7354 bits (86), Expect = 5.855e-49
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  649 NQPMGVYPTLWEADDWAPE 705
            NQPM +Y +LWEADDWA E
Sbjct:  183 NQPMRIYSSLWEADDWATE 201          
BLAST of EY660036 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.629e-49
Identity = 83/145 (57.24%), Postives = 108/145 (74.48%), Query Frame = 2
Query:  194 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRXYKNS 628
            F  ++  TW+  H +Q  GG  +QL+LD+ +G GF SK  YLFG  SM IKL  GD+AG VTAFY++S T N  DE+DFEFLGNRTGQP  +QTN++  GKG+REQR+ LWFDP+  YH Y+ILWN + IVF+VD++PIR +KN+
Sbjct:   35 FGRNYVPTWAFDHQKQFNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSS-TNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNA 178          

HSP 2 Score: 33.8834 bits (76), Expect = 7.629e-49
Identity = 19/38 (50.00%), Postives = 22/38 (57.89%), Query Frame = 1
Query:  649 NQPMGVYPTLWEADDWAPEVV*RNRLEQ-----APFYA 747
            NQPM +Y +LW ADDWA     R  LE+     APF A
Sbjct:  188 NQPMKLYSSLWNADDWAT----RGGLEKTNWANAPFVA 221          
BLAST of EY660036 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.297e-48
Identity = 79/146 (54.11%), Postives = 106/146 (72.60%), Query Frame = 2
Query:  191 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRXYKNS 628
            +F + F +TW        E G+ +   LD+ SG GF SK++YLFG++ MKIKLVPG+SAGTVTA+Y++S  E   DE+DFEFLGN TGQPY + TN++  GKG+RE +  LWFDP AD+H YT+LWN  +I+F VD +PIR +KN+
Sbjct:   26 SFYDSFDITWGAGRANIFESGQLLTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSKGETW-DEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNN 170          

HSP 2 Score: 34.6538 bits (78), Expect = 1.297e-48
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  649 NQPMGVYPTLWEADDWAPE 705
            +QPM +Y +LWEADDWA +
Sbjct:  180 SQPMKIYSSLWEADDWATQ 198          
The following BLAST results are available for this feature:
BLAST of EY660036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH6_ARATH1.283e-7665.30Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH7.285e-7260.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC4.202e-5359.31Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH9.309e-5359.31Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC2.921e-5157.24Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB4.491e-4956.55Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTHA_PHAAN5.080e-4950.00Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH14_ARATH5.855e-4953.79Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH4_ARATH7.629e-4957.24Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH12_ARATH1.297e-4854.11Probable xyloglucan endotransglucosylase/hydrolase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660036 ID=EY660036; Name=EY660036; organism=Citrus sinensis; type=EST; length=877bp
TTCTCAACCCACGCGTCCGCTCGGCATATTTACCACAACATATAATTAAA
GTTCTCTTTCTAATTAGTAACAGATAATATTTTATTGTACGGCTTGTTTT
ACAGCTATGGCTATCCTAAGAAATGCAATAGCATTATTTGTGTTGCTTTA
CTGTCTTGTATCCTGCTCTTGCGTTTTAGGGCGACCGGCTACTTTTCTTG
AGGATTTTAAAGTCACATGGTCCGATGCCCATCTCAGGCAAATCGAGGGA
GGGAGGGCCATCCAGCTAGTTCTAGACCAAAATTCAGGATGTGGGTTTGC
TTCCAAAAGGCAGTACTTGTTCGGGCGTGTAAGCATGAAGATCAAGCTCG
TTCCTGGAGACTCTGCTGGAACTGTCACTGCATTTTATATGAATTCCAAC
ACCGAAAATGTGAGAGACGAGCTTGATTTTGAGTTCCTGGGAAACCGAAC
GGGTCAGCCTTACACGGTCCAGACCAATATCTATGCAAATGGAAAAGGCG
ATAGAGAACAGAGAGTGAACCTCTGGTTTGACCCTGCTGCAGATTATCAC
CTTTACACTATTCTCTGGAACCATCACCATATTGTCTTCTATGTGGATGA
TGTGCCCATCAGGNNTTACAAAAACAGTGGAAGGGCTCCATTTCAATGAA
CCAACCCATGGGGGTGTATCCGACGCTGTGGGAAGCAGATGACTGGGCAC
CAGAAGTGGTCTAGAGAAATAGATTGGAGCAAGCTCCTTTTTATGCTATT
ACGAGACTTTGATATTGAGGCCTGCCCAGTCCTGAACCACAAACTGGGCC
TCAACCCAAGTAACTGGGGGGAAGCAAATAATATCCAACCCTCCCGCCAT
GGAAGCAAAAAAACAAATGGGTCGCCT
back to top