EY660034

Overview
NameEY660034
Unique NameEY660034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660034 vs. ExPASy Swiss-Prot
Match: M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.389e-15
Identity = 38/104 (36.54%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   61 KKGIGEMGFRDLSSLHHSLATNQGWRIMQFPSSLVARVLKARYFKHTGFMNAGLGSKLSFVWRSIVWGRQVVHKGARWRIGNGQNVLVYENNWIPKPTTFKPLS 372
            K+  G +GFRDL   + +L   Q +RI+  P +L++R+L++RYF H+  M   +G++ S+ WRSI+ GR+++ +G    IG+G +  V+ + WI   T   PL+
Sbjct:   51 KEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDETPLPPLN 154          
BLAST of EY660034 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.217e-12
Identity = 66/264 (25.00%), Postives = 113/264 (42.80%), Query Frame = 1
Query:   58 PKKGIGEMGFRDLSSLHHSLATNQGWRIMQFPSSLVARVLKARYFKHTGFMNAGLG----SKLSFVWRSIVWG-RQVVHKGARWRIGNGQNVLVYENNWIPKPTTFKPLSALSMGADTTIAE*IDEKQQW----------REDLILQHFRPEDAEAIMQIPLPKRPKEDQLIWHYDKKGYYSVKSGYQVAMRIKFPEDPSCSNHDQYLWRFI*KLAIPKKSELFFMESSSRFIAHSRKLMEKKGFCRTMVQSCYCHVEKVSHAL 804
            PKK  G +G R   S++ +L +  GWR++Q  +SL   VL+ +Y  H G +            S  WRSI  G R VV  G  W  G+GQ +  + + W+    + KPL  L  G   T  + +  K  W           +     + R E    ++ +    R   D+L W + + G +SV+S Y++    + P  P+ ++    LW    K+ +P++ + F     ++ +    +   +      + Q C   VE + H L
Sbjct:   95 PKKE-GGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKY--HVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWV----SGKPLLELDNGERPTDCDTVVAKDLWIPGRGWDFAKIDPYTTNNTRLELRAVVLDLVTGAR---DRLSWKFSQDGQFSVRSAYEMLTVDEVPR-PNMASFFNCLW----KVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVL 343          
The following BLAST results are available for this feature:
BLAST of EY660034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
M310_ARATH2.389e-1536.54Uncharacterized mitochondrial protein AtMg00310 OS... [more]
RNHX1_ARATH4.217e-1225.00Putative ribonuclease H protein At1g65750 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660034 ID=EY660034; Name=EY660034; organism=Citrus sinensis; type=EST; length=941bp
ATGGACGCCTGCAGTCCGGTCCGGAATTCTCGACACCGGCGCGTCCGGAA
AAATTTTCCCAAAAAAGGTATAGGCGAAATGGGCTTCAGAGATCTCTCGA
GCTTGCACCATTCACTCGCAACAAACCAAGGGTGGAGAATTATGCAATTT
CCAAGCTCGCTGGTGGCAAGAGTCTTAAAGGCTAGATATTTTAAACATAC
GGGGTTTATGAATGCTGGCCTAGGATCAAAACTGTCCTTTGTTTGGAGAA
GCATAGTTTGGGGAAGACAAGTGGTTCACAAAGGAGCGAGATGGCGAATT
GGGAATGGACAGAATGTGCTGGTTTATGAAAACAATTGGATCCCCAAACC
TACAACCTTTAAGCCCCTATCAGCTCTTTCAATGGGGGCTGACACGACAA
TAGCTGAGTGAATAGACGAGAAGCAACAATGGAGGGAAGATTTGATCCTT
CAGCATTTTAGGCCAGAAGATGCAGAAGCCATAATGCAGATTCCACTTCC
AAAAAGACCAAAAGAGGATCAGTTGATATGGCACTACGATAAGAAAGGGT
ATTACTCGGTCAAGAGTGGATACCAAGTTGCTATGCGAATAAAGTTCCCT
GAGGACCCAAGCTGCTCAAATCATGATCAATACCTATGGCGTTTTATCTA
GAAGCTTGCAATTCCCAAAAAAAGTGAGCTTTTTTTTATGGAGAGTAGCT
CACGATTTATCGCCCACAGCAGAAAACTTATGGAAAAAAAAGGTTTTTGC
AGAACCATGGTGCAAAGTTGTTACTGTCATGTAGAAAAGGTGTCCCATGC
CTTGGTAGAGCGCAATAGGGCAAGGAAGATCTAGAGGTACTCTAATCTGG
CAAAAGAATTTCGTGGNAGTTCACAGTGGTGCAATGGTTTGGCTGGTGCA
TTTTCGGCCCACAGCATGCTAAAGTTGAGGAAGCTGAAGTA
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