EY660028

Overview
NameEY660028
Unique NameEY660028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 5.083e-84
Identity = 133/184 (72.28%), Postives = 143/184 (77.72%), Query Frame = 1
Query:   64 MAAATSVAPLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXX-LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF-XXXXXXXXXXXXVKTAENFA 603
            M   ++ A LNGL SSF+ GGKK+QALL    T RVT           + PKKSWIPAVK GGNL++PEWLDGSLPGD+GFDPLGLGKDPAFL  +REAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF              KTAENFA
Sbjct:    1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFA 184          

HSP 2 Score: 71.633 bits (174), Expect = 5.083e-84
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 2
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGGKFFDPL LAGT  +GVY PDT KL+R K+AEI   RL M+A++IF
Sbjct:  192 YPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIF 240          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.920e-83
Identity = 133/183 (72.68%), Postives = 141/183 (77.05%), Query Frame = 1
Query:   70 AATSVAPLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXXLPP--KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF-XXXXXXXXXXXXVKTAENFA 603
            A TS A LNGL SSF+ GG KSQALLA     RV           L    KKSWIPAV+GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFL  +REAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF              KTAENFA
Sbjct:    2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFA 184          

HSP 2 Score: 72.7886 bits (177), Expect = 1.920e-83
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 2
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGGKFFDPL LAGT  +GVY PDT KL+R KVAEI   RL M+A++IF
Sbjct:  192 YPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIF 240          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 7.932e-64
Identity = 127/189 (67.20%), Postives = 143/189 (75.66%), Query Frame = 1
Query:   64 MAAATSV-APLNGLGSSFINGGKKS-QALLAGTNRV------TXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF-XXXXXXXXXXXXVKTAENFA 603
            MAAATS  A +NG  S F++GGKKS Q+LL   ++V      T            PKKSWIPAVKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFL  +REAELIHGRWAM AV+GIFVGQAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF              +TAENF+
Sbjct:    1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFS 189          

HSP 2 Score: 72.0182 bits (175), Expect = 5.367e-12
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  575 PWSRLLKTLP-CDW*TSYPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            PWSR  +          YPGGKFFDPL LAGT  +GVY PDT KL+R K+AEI   RL M+A++IF
Sbjct:  180 PWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIF 245          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.542e-21
Identity = 49/118 (41.53%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  202 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVD 537
            P +  W P          PEWLDGSLPGD+GFDPLGLG DP  L  + +AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+GW E +RW D
Sbjct:   63 PDRPLWFPGSTP------PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWAD 171          

HSP 2 Score: 27.7202 bits (60), Expect = 2.542e-21
Identity = 17/47 (36.17%), Postives = 23/47 (48.94%), Query Frame = 2
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALV 763
            YPGG +FDPL        G       K+   +  EI  GRL M+A++
Sbjct:  196 YPGGLWFDPL--------GWGSGSPAKIKELRTKEIKNGRLAMLAVM 234          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.957e-20
Identity = 62/214 (28.97%), Postives = 86/214 (40.19%), Query Frame = 1
Query:   70 AATSVAPLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKS----------WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLT-------------------------------------------RHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            AATS A      +S I G + +  +  G+ R T           P K +          W P        I+P+WLDGSL GDYGFDP GLGK   +L                                            R RE ELIHGRWAM A +G    +  +G+ W +AG        +  G   PFS  +L+  ++L++G++E +R
Sbjct:    2 AATSAA---AAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGA------ISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR 206          

HSP 2 Score: 37.7354 bits (86), Expect = 5.957e-20
Identity = 23/49 (46.94%), Postives = 27/49 (55.10%), Query Frame = 2
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGGKFFDPL LA          D  K  + ++AEI   RL MVA + F
Sbjct:  217 YPGGKFFDPLGLAA---------DPEKTAQLQLAEIKHARLAMVAFLGF 256          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.965e-20
Identity = 47/118 (39.83%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  202 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVD 537
            P +  W P          P WLDGSLPGD+GFDPLGL  DP  L  +++AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+GW E +RW D
Sbjct:   63 PDRPLWFPGSTP------PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFT---DTTTLFIVELVLIGWAEGRRWAD 171          

HSP 2 Score: 27.7202 bits (60), Expect = 5.965e-20
Identity = 17/47 (36.17%), Postives = 23/47 (48.94%), Query Frame = 2
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALV 763
            YPGG +FDPL        G       K+   +  EI  GRL M+A++
Sbjct:  196 YPGGLWFDPL--------GWGSGSPAKIKELRTKEIKNGRLAMLAVM 234          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.254e-19
Identity = 55/171 (32.16%), Postives = 71/171 (41.52%), Query Frame = 1
Query:  202 PPKKS-----------WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLT-------------------------------------------RHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            PPKKS           W P    G N   PEWLDGS+ GD GFDP GLGK   +L                                            R RE ELIHGRWAM   +G    +A +GI W +AG        +  G   PFS  +L+  ++L++G++E +R
Sbjct:   43 PPKKSRQVQDDGDRLVWFP----GAN--PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQR 207          

HSP 2 Score: 38.891 bits (89), Expect = 8.254e-19
Identity = 25/49 (51.02%), Postives = 28/49 (57.14%), Query Frame = 2
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG +FDPL LA          D  KLD  K+AEI   RL MVA +IF
Sbjct:  218 YPGG-YFDPLGLAA---------DPEKLDTLKLAEIKHSRLAMVAFLIF 256          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.067e-18
Identity = 61/212 (28.77%), Postives = 85/212 (40.09%), Query Frame = 1
Query:   70 AATSVAPLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKS--------WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLT-------------------------------------------RHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            AATS A      +S I G +    + + ++R T           P K          W P  K      +PE+LDGSL GDYGFDP GLGK   +L                                            R RE ELIHGRWAM A +G    +  +G+ W +AG        +  G   PFS  +L+  ++L++G++E +R
Sbjct:    2 AATSTAA----AASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAK------SPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR 203          

HSP 2 Score: 35.8094 bits (81), Expect = 3.067e-18
Identity = 22/49 (44.90%), Postives = 26/49 (53.06%), Query Frame = 2
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGGKFFDPL LA          D  K  + ++AEI   RL MV  + F
Sbjct:  214 YPGGKFFDPLGLAS---------DPVKKAQLQLAEIKHARLAMVGFLGF 253          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.763e-18
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKR 528
            P +LDGS PGD+GFD LGLG+ PA L R++E+ELIH RWAM AV GI V +A     W +A    A PG  A     P  +G+L   L  + L + +VE +R
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157          

HSP 2 Score: 31.187 bits (69), Expect = 6.763e-18
Identity = 21/49 (42.86%), Postives = 25/49 (51.02%), Query Frame = 2
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG F DPL          Y  D  K +  KV EI  GRL ++A+V F
Sbjct:  168 YPGGAF-DPLG---------YSKDPAKFEELKVKEIKNGRLALLAIVGF 206          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.508e-17
Identity = 44/111 (39.64%), Postives = 58/111 (52.25%), Query Frame = 1
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIF---VGQAWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            P +L+G  PGDYG+D  GL  DP    R+R  E+IHGRWAM   +G     V Q W G+      WF+AG+            +P  +   S  ++LG Q+LLMG VE  R
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 177          

HSP 2 Score: 32.7278 bits (73), Expect = 2.508e-17
Identity = 22/49 (44.90%), Postives = 27/49 (55.10%), Query Frame = 2
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG++FDPL LA    D V F +       KV EI  GRL M ++  F
Sbjct:  191 YPGGQYFDPLGLA---DDPVTFAE------LKVKEIKNGRLAMFSMFGF 230          
The following BLAST results are available for this feature:
BLAST of EY660028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB4B_SOLLC5.083e-8472.28Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4A_SOLLC1.920e-8372.68Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL7.932e-6467.20Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB12_PETHY2.542e-2141.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB4A_ARATH5.957e-2028.97Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB12_SOLLC5.965e-2039.83Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB4C_ARATH8.254e-1932.16Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4B_ARATH3.067e-1828.77Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB11_SOLLC6.763e-1847.06Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB23_HORVU2.508e-1739.64Chlorophyll a-b binding protein of LHCII type III,... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-G05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660028 ID=EY660028; Name=EY660028; organism=Citrus sinensis; type=EST; length=927bp
TCCTCGCGCGCGCGTCCGTGACAGCCCTTTCTGCACAAGAGAAGTCAAGT
AGAGATCATATCTATGGCGGCTGCAACATCCGTTGCTCCGTTAAACGGAT
TGGGTTCTTCATTCATAAATGGTGGCAAGAAGAGCCAGGCTCTTTTGGCT
GGCACGAATAGAGTGACAAGTTCTAAAAAGTCAGTTGTTGTAGCTGCTCT
TCCACCTAAAAAATCTTGGATTCCTGCTGTTAAAGGTGGTGGCAACCTCA
TTAATCCCGAATGGCTCGATGGCTCTCTCCCAGGTGACTACGGATTCGAC
CCACTTGGGCTTGGAAAGGACCCAGCATTCCTGACCCGCCACAGAGAAGC
AGAACTGATCCACGGACGATGGGCAATGGCTGCAGTTGTTGGGATATTCG
TCGGACAGGCGTGGAGTGGGATTCCATGGTTCGAGGCTGGAGCAGATCCT
GGAGCCATAGCACCCTTCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCT
CCTTATGGGTTGGGTTGAGAGCAAGCGGTGGGTTGATTTTTTCAATCTGA
ATCTCAATCAGTTGAATGGGCNACCCCTGGTCAAGACTGCTGAAAACTTT
GCCATGCGACTGGTGAACAAGCTACCCTGGTGGAAAGTTTTTTGATCCCT
TATGTTTGGCTGGAACATTTAAGGATGGTGTCTACTTTCCTGACACTGAN
AAGCTTGACCGGTTCAAAGTTGCTGAGATTTAACCTGGTAGGCTTGGTAT
GGTGGCCCTGGTGATTTTTCTACTTTGAACTGGGCCAGGCAAGACGCCCC
TTGGGGGCTCTTGTTTTGAAAACATGCTTTTGTAAATACTCCCTGATTGG
CGGTAAGCGCGACCCTCGGGGGTAATGGAGTCCCCCCTTGAAAGTCCATT
TGAGGGGGTAAAAAAAAAAAAAAAAAA
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