EY659834

Overview
NameEY659834
Unique NameEY659834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659834 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.492e-70
Identity = 131/145 (90.34%), Postives = 137/145 (94.48%), Query Frame = 1
Query:   22 GYACNKKNYDGDVQSDFLAQGFGPLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 456
            GY    KNYDGDVQSDFLAQGFG LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAACIG VESGKMTKDLALIIHGSK++R+HYLNTEEFIDAVAD+L+ARL
Sbjct:  266 GYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410          
BLAST of EY659834 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.650e-69
Identity = 132/146 (90.41%), Postives = 137/146 (93.84%), Query Frame = 1
Query:   22 GYACNKKNYDGDVQSDFLAQGFGPLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLAL-IIHGSKMTREHYLNTEEFIDAVADDLRARL 456
            GY    KNYDGDVQSDFLAQGFG LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAACIG VESGKMTKDLAL IIHGSK++REHYLNTEEFIDAVAD+L+ARL
Sbjct:  266 GYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADELKARL 411          
BLAST of EY659834 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 2.155e-69
Identity = 129/146 (88.36%), Postives = 138/146 (94.52%), Query Frame = 1
Query:   22 GYACNKKNYDGDVQSDFLAQGFGPLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 459
            GY    KNYDGDVQSDFLAQGFG LGLMTSVLVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA+LLDFTEKLEAACIG VE+GKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L ARLS
Sbjct:  267 GYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARLS 412          
BLAST of EY659834 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.070e-68
Identity = 127/146 (86.99%), Postives = 137/146 (93.84%), Query Frame = 1
Query:   22 GYACNKKNYDGDVQSDFLAQGFGPLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 459
            GY    KNYDGDVQSDFLAQGFG LGLMTSVLVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA LLDFTEKLEAACIG VESGKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L+ ++S
Sbjct:  287 GYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNATLLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKTKIS 432          
BLAST of EY659834 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.926e-50
Identity = 99/146 (67.81%), Postives = 118/146 (80.82%), Query Frame = 1
Query:   25 YACNKKNYDGDVQSDFLAQGFGPLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 459
            +AC  KNYDGDVQSD +AQG+G LG+MTSVL+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  267 WAC--KNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of EY659834 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.926e-50
Identity = 99/146 (67.81%), Postives = 118/146 (80.82%), Query Frame = 1
Query:   25 YACNKKNYDGDVQSDFLAQGFGPLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 459
            +AC  KNYDGDVQSD +AQG+G LG+MTSVL+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  267 WAC--KNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of EY659834 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 8.514e-50
Identity = 99/146 (67.81%), Postives = 117/146 (80.14%), Query Frame = 1
Query:   25 YACNKKNYDGDVQSDFLAQGFGPLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 459
            +AC  KNYDGDVQSD +AQG+G LG+MTSVL+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F   LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  267 WAC--KNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of EY659834 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 8.514e-50
Identity = 99/146 (67.81%), Postives = 118/146 (80.82%), Query Frame = 1
Query:   25 YACNKKNYDGDVQSDFLAQGFGPLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 459
            +AC  KNYDGDVQSD +AQG+G LG+MTSVL+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  267 WAC--KNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of EY659834 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.897e-49
Identity = 99/142 (69.72%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   25 YACNKKNYDGDVQSDFLAQGFGPLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 444
            +AC  KNYDGDVQSD LAQGFG LGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  275 WAC--KNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 414          
BLAST of EY659834 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.897e-49
Identity = 99/142 (69.72%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   25 YACNKKNYDGDVQSDFLAQGFGPLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 444
            +AC  KNYDGDVQSD LAQGFG LGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  306 WAC--KNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 445          
The following BLAST results are available for this feature:
BLAST of EY659834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC1.492e-7090.34Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOLTU1.650e-6990.41Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHC_SOYBN2.155e-6988.36Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_MEDSA1.070e-6886.99Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_MICOH2.926e-5067.81Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_MICME2.926e-5067.81Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_RAT8.514e-5067.81Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE8.514e-5067.81Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHP_PIG1.897e-4969.72Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_BOVIN1.897e-4969.72Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659834 ID=EY659834; Name=EY659834; organism=Citrus sinensis; type=EST; length=929bp
TTTCAAAGACCGGGCGTCCGAGGTTATGCTTGCAATAAAAAAAATTATGA
TGGAGATGTCCAGAGTGATTTCCTAGCTCAAGGGTTTGGACCCCTTGGAT
TGATGACATCTGTACTGGTATGCCCTGATGGGAAGACAATTGAAGCCGAA
GCAGCCCATGGAACAGTTACCCGACACTACAGAGTTCATCAGAAAGGTGG
TGAAACTAGCACAAACAGCATAGCCTCCATCTTTGCTTGGTCACGAGGGC
TTGCACATAGGGCGAAGTTGGACAACAATGCTAGGCTATTGGATTTTACT
GAGAAACTAGAAGCTGCATGTATTGGCACTGTTGAATCTGGGAAGATGAC
CAAGGATCTTGCACTTATTATCCATGGATCTAAGATGACTAGGGAACACT
ATCTGAATACTGAAGAGTTCATTGATGCTGTGGCCGACGATCTAAGAGCA
AGACTCTCTGGCAAAGCATGATTTTTTTTGTTGCAGATGCTACACATTCA
AAGGTAAAGACTTGGGGAAGCTTCCTTTGGTTATCTTTTTCATATTATGC
TGAGAAGAAATAATTGAAGAGGGGAAAATTGGGGATTGGGATTTGGTTCT
CTTCTAATTGCTACAATAGACTGCTTTCCTGTTGATCGACAAACTCTCAT
TTTCATGCAAGCAAATGTCTTGAACATGGCTTGTTATAAACAAAACTATT
GCTGCCAAATTTTACGTCATGGGTTTATTGAGCTGCACCTCTGTTGCCAA
AGTTTTAAGATGTACGCACACAAAACCTAAATATTTGCATTTCATCTCAT
GGTGAAATGCTCGTATTTTTGGATAGCTTTTGGAACGAAAAAAAAAAAAA
AAAAAAAAAGGCCGCCCGTCCTTAGATCCAAGCTTACGACGCTGGATGCG
AGGCATAACTCTCTAAAGGCCCCTAAATC
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