EY659726

Overview
NameEY659726
Unique NameEY659726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659726 vs. ExPASy Swiss-Prot
Match: HYUC_PSESN (Hydantoin utilization protein C OS=Pseudomonas sp. (strain NS671) GN=hyuC PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.596e-11
Identity = 39/130 (30.00%), Postives = 63/130 (48.46%), Query Frame = 2 
Query:  185 VEKHVLESGSIDTVGTVEL*CDSIYPVS*GILELHPGAINSIPSKSHLEIDTRDIDEKRRNSVIEKIHQSAITIAKNRAVTLSEFKIVNQDPPALSEKSIIEAVEAASKELNLTHKFMISRAYHDSLFMA 574
            VE   +   +  TVGTV            G +   PG  N IP      +D RDI+ +RRN +IEKI +    ++  R +     K +   P   SE ++I +++ + KEL +    ++S A HD++F+A
Sbjct:  254 VETLCMNDPNAPTVGTV------------GRIAAFPGGSNIIPESVEFTLDIRDIELERRNKIIEKIEEKIKLVSNTRGLEYQIEKNMAAVPVKCSE-NLINSLKQSCKELEIDAPIIVSGAGHDAMFLA 370

HSP 2 Score: 30.4166 bits (67), Expect = 2.596e-11
Identity = 15/29 (51.72%), Postives = 17/29 (58.62%), Query Frame = 1 
Query:   13 IGIPTAIAAPASMKVDFEGNGGHAGAVLM 99
            IGI + IA P+  KV   G  GHAG V M
Sbjct:  209 IGIVSGIAGPSWFKVRLVGEAGHAGTVPM 237
The following BLAST results are available for this feature:
BLAST of EY659726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HYUC_PSESN2.596e-1130.00Hydantoin utilization protein C OS=Pseudomonas sp.... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-D08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659726 ID=EY659726; Name=EY659726; organism=Citrus sinensis; type=EST; length=726bp
CCACGCGTCCGAATTGGTATACCGACTGCGATTGCAGCTCCTGCAAGTAT
GAAAGTAGATTTTGAAGGCAATGGAGGGCACGCGGGTGCTGTCTTGATGC
CGAATAGTCAACAAGATTCACGACGTTTTACATGTAATGAGCAGGAACGA
TGCTGGTCTGGCTGCTGCAGAACTAGCGCTAGCTGTCGAGAAACATGTTC
TAGAATCTGGATCCATTGATACCGTTGGTACAGTCGAACTATGATGTGAC
TCAATATATCCTGTTTCCTAAGGTATTCTGGAGCTGCATCCTGGTGCAAT
CAACAGCATACCAAGCAAGTCACACTTAGAAATTGACACACGAGACATTG
ATGAAAAGCGAAGAAATAGTGTGATTGAAAAAATCCATCAGTCTGCAATT
ACAATTGCTAAAAATCGTGCGGTCACTCTATCTGAATTCAAAATCGTAAA
TCAGGATCCACCAGCTCTTTCTGAGAAATCAATAATTGAGGCAGTGGAAG
CAGCGTCAAAAGAACTTAATTTAACACATAAGTTTATGATAAGCAGAGCT
TACCATGATTCACTCTTTATGGCCAGGTATAGATAGAGAGAAAGAGTTAA
TATTTGTACCTTGTCCAGTACAATGTGCATAATGATTTGTATAATACAAT
GTGCATTTGTCCTTTGTATCAAAGAAAATATGAAACGTAAAACTAAACAT
TTTTCTTGAACAAAAAAAAAAAAAAA
back to top