EY676431

Overview
NameEY676431
Unique NameEY676431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length955
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676431 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 3.140e-63
Identity = 136/180 (75.56%), Postives = 145/180 (80.56%), Query Frame = 3
Query:   12 DRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSPSWATWSHEFSF*EGSERN*QTREGGCFLWIMKKKINQGCLFLELPRVAPPNPTITG 551
            DRIMA DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKAI+LADMAHISGLVAAGVIPSPF+YADVVTTTTHKS      +  F      E N Q +E    L+  + KINQ  +F  L +  P N TITG
Sbjct:  166 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEVNKQGKE---VLYDYEDKINQ-AVFPGL-QGGPHNHTITG 340          
BLAST of EY676431 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 5.355e-63
Identity = 135/180 (75.00%), Postives = 146/180 (81.11%), Query Frame = 3
Query:   12 DRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSPSWATWSHEFSF*EGSERN*QTREGGCFLWIMKKKINQGCLFLELPRVAPPNPTITG 551
            DRIMA DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKAIMLADMAHISGLVAAGVIPSPF+YADVVTTTTHKS      +  F F +G +     ++G    +  + KINQ  +F  L +  P N TITG
Sbjct:  166 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIF-FRKGLKE--VNKQGKEVFYDYEDKINQ-AVFPGL-QGGPHNHTITG 340          
BLAST of EY676431 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.193e-62
Identity = 134/180 (74.44%), Postives = 145/180 (80.56%), Query Frame = 3
Query:   12 DRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSPSWATWSHEFSF*EGSERN*QTREGGCFLWIMKKKINQGCLFLELPRVAPPNPTITG 551
            +RIMA DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL+ESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY+RIRKVCNKQKAI+LADMAHISGLVAAGVIPSPF+YADVVTTTTHKS      +  F      E N Q +E     +  + KINQ  +F  L +  P N TITG
Sbjct:  166 ERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKE---VFYDYEDKINQ-AVFPGL-QGGPHNHTITG 340          
BLAST of EY676431 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.471e-62
Identity = 144/232 (62.07%), Postives = 165/232 (71.12%), Query Frame = 3
Query:   12 DRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSPSWATWSHEFSF*EGSERN*QTREGGCFLWIMKKKINQGCLFLELPRVAPPNPTITGFN-KLPLKTAPFFQKIKANPGASFCNHFPPYIFSKLLPRKGG*RQLFSGGKQ 704
            DRIMA DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL+ESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKA++LADMAHISGLVAAGVIPSPF+YADVVTTTTHKS      +  F F +G +     ++G    +  + KINQ  +F  L +  P N TITG    L   T P ++  +    ++         F+K L  KG    L SGG +
Sbjct:  166 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIF-FRKGLKE--VNKQGKEVFYDYEDKINQ-AVFPGL-QGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSK------FAKALSEKG--YDLVSGGTE 384          
BLAST of EY676431 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.471e-62
Identity = 133/180 (73.89%), Postives = 144/180 (80.00%), Query Frame = 3
Query:   12 DRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSPSWATWSHEFSF*EGSERN*QTREGGCFLWIMKKKINQGCLFLELPRVAPPNPTITG 551
            +RIMA DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL+ESTGYIDYDQ+EKSATLFRPKLIVAGASAYARLYDY RIRKVCNKQKA+MLADMAHISGLVAA VIPSPF+YADVVTTTTHKS      +  F      E N Q +E    L+  + KINQ  +F  L +  P N TITG
Sbjct:  165 ERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKE---VLYDFEDKINQ-AVFPGL-QGGPHNHTITG 339          
BLAST of EY676431 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 4.283e-50
Identity = 87/123 (70.73%), Postives = 107/123 (86.99%), Query Frame = 3
Query:   12 DRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKS 380
            +R+M  DLPHGGHLSHGYQTD++KISAVS +FETMPYR++  TG IDYD LEK+A L+RPK++VAG SAY RL DY+R+R++ +K  A ++ DMAHISGL+AAGVIPSPFEYAD+VTTTTHKS
Sbjct:  128 ERLMGLDLPHGGHLSHGYQTDSRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSAYCRLIDYKRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKS 250          

HSP 2 Score: 31.187 bits (69), Expect = 4.283e-50
Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = 1
Query:  382 LLGPRGAMNFPFRKGVKEINKQGKEGVFYGL 474
            L GPRGAM F FR+GV+ +N +  + + Y L
Sbjct:  251 LRGPRGAMIF-FRRGVRSVNPKTGQEILYDL 280          
BLAST of EY676431 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.610e-49
Identity = 85/123 (69.11%), Postives = 106/123 (86.18%), Query Frame = 3
Query:   12 DRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKS 380
            DR+M  DLPHGGHLSHGYQT TKKIS +S +FET+PYRL+E TGYIDY++LE+ A  +RPK+IVAGASAY+RL DY R+R++C+K  A ++ADMAHISGLVAA V+P PF +AD+VTTT+HKS
Sbjct:  165 DRLMGLDLPHGGHLSHGYQTPTKKISFISKYFETLPYRLDEKTGYIDYNKLEELAITYRPKIIVAGASAYSRLIDYARLREICDKVNAYLMADMAHISGLVAAKVMPGPFTHADIVTTTSHKS 287          

HSP 2 Score: 33.8834 bits (76), Expect = 1.610e-49
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 1
Query:  382 LLGPRGAMNFPFRKGVKEINKQGKEGVF 465
            L GPRGAM F FR+GV+  NK+G+E ++
Sbjct:  288 LRGPRGAMIF-FRRGVRRTNKKGEEELY 314          
BLAST of EY676431 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.457e-47
Identity = 84/123 (68.29%), Postives = 104/123 (84.55%), Query Frame = 3
Query:   12 DRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKS 380
            +R+M   LP GGHLSHGYQT+T+KISAVS +FE+ PYR++  TG IDYD LEK+A L+RPK++VAG SAY RL DY+R+R++ +K  A ++ DMAHISGLVAAGVIPSPFEYAD+VTTTTHKS
Sbjct:  127 ERLMGLHLPDGGHLSHGYQTETRKISAVSTYFESFPYRVDPETGIIDYDTLEKNAVLYRPKILVAGTSAYCRLIDYKRMREIADKVGAYLMVDMAHISGLVAAGVIPSPFEYADIVTTTTHKS 249          

HSP 2 Score: 30.8018 bits (68), Expect = 1.457e-47
Identity = 16/31 (51.61%), Postives = 21/31 (67.74%), Query Frame = 1
Query:  382 LLGPRGAMNFPFRKGVKEINKQGKEGVFYGL 474
            L GPRGAM F FR+GV+ ++ +  E V Y L
Sbjct:  250 LRGPRGAMIF-FRRGVRSVHPKTGEEVMYDL 279          
BLAST of EY676431 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.580e-46
Identity = 82/123 (66.67%), Postives = 102/123 (82.93%), Query Frame = 3
Query:   12 DRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKS 380
            +R+M   LP GGHLSHGY T+ +KISAVS +FE+ PYR+N  TG IDYD LEK+A L+RPK++VAG SAY RL DY+R+R++ +K  A ++ DMAHISGL+AAGVIPSPFEYAD+VTTTTHKS
Sbjct:  127 ERLMGLYLPDGGHLSHGYATENRKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKVLVAGTSAYCRLIDYKRMREIADKCGAYLMVDMAHISGLIAAGVIPSPFEYADIVTTTTHKS 249          

HSP 2 Score: 31.9574 bits (71), Expect = 1.580e-46
Identity = 21/32 (65.62%), Postives = 23/32 (71.88%), Query Frame = 1
Query:  382 LLGPRGAMNFPFRKGVKEIN-KQGKEGVFYGL 474
            L GPRGAM F FR+GV+ IN K GKE V Y L
Sbjct:  250 LRGPRGAMIF-FRRGVRSINPKTGKE-VLYDL 279          
BLAST of EY676431 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.487e-46
Identity = 107/197 (54.31%), Postives = 130/197 (65.99%), Query Frame = 3
Query:   12 DRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSPSWATWSHEFSF*EGSERN*QTREGGCFLWIMKKKINQGCLFLELP--RVAPPNPTITGFNKL--PLKTAPFFQ 590
            DR+M  DLPHGGHLSHG+ T  K ISAVS +F TMPY +N+ TG IDYD LEK+A  FRPK+IVAGASAYARL DY+R+RK+     A +L DMAHISGLVAAGVIPSPFEYAD+VTTTTHKS      +  F + +G+  +   + G   L+ ++ KIN    F   P  +  P N TIT         KT  F+Q
Sbjct:  128 DRLMGLDLPHGGHLSHGFSTPQKAISAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIVAGASAYARLVDYKRMRKITEMCNAYLLCDMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIF-YRKGTRSH--DKRGNPILYELEDKIN----FSVFPGHQGGPHNHTITALAVALGQAKTPEFYQ 317          
The following BLAST results are available for this feature:
BLAST of EY676431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYN_FLAPR3.140e-6375.56Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_FLAPR5.355e-6375.00Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_SOLTU1.193e-6274.44Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_PEA3.471e-6262.07Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH3.471e-6273.89Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANAL4.283e-5070.73Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_NEUCR1.610e-4969.11Putative serine hydroxymethyltransferase, mitochon... [more]
GLYC_ASHGO1.457e-4768.29Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYC_YEAST1.580e-4666.67Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYC_SCHPO3.487e-4654.31Probable serine hydroxymethyltransferase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-F01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676431 ID=EY676431; Name=EY676431; organism=Citrus sinensis; type=EST; length=955bp
CCACGCGTCCGGATAGGATCATGGCACCTGATCTTCCTCATGGTGGGCAT
CTCTCACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCAT
ATTTTTTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAG
ACTATGACCAGTTGGAGAAAAGTGCCACCCTCTTCAGGCCAAAATTGATT
GTTGCTGGTGCTAGTGCTTATGCACGATTGTATGATTATGAGCGTATTCG
CAAGGTTTGCAACAAACAAAAAGCTATAATGTTGGCAGATATGGCACACA
TTAGTGGTTTGGTTGCTGCTGGTGTCATCCCTTCACCTTTTGAGTATGCA
GATGTTGTGACCACCACAACTCACAAATCACCTTCTTGGGCCACGTGGAG
CCATGAATTTTCCTTTTAGGAAGGGAGTGAAAGAAATTAACAAACAAGGG
AAGGAGGGTGTTTTTTATGGATTATGAAGAAAAAAATAAATCAAGGCTGT
CTTTTCCTGGAACTCCCAAGGGTGGCCCCCCCCAACCCCACAATTACTGG
GTTTAACAAGTTGCCTTTGAAAACAGCCCCCTTCTTCCAAAAAATTAAAG
CCAATCCAGGTGCAAGTTTTTGTAACCATTTTCCTCCTTATATTTTCTCC
AAACTCCTGCCCAGGAAAGGGGGATAAAGACAATTGTTTTCTGGGGGGAA
ACAAGAAAAACCCACCAATTGTTAGGGGTAAAATTTAAAAATAGATGATG
AAAATTGACGGGTTTACGGAATATGAAAGAAAGTGGTATGGGGACCGTGT
TCTTAGTAGGGCCGTGGCACGAGACTCTAACAGTCATCCCAGGGGGAGGT
GGATGTCGGCCAGGCGGGTCCTGGGATGGAGAAAGCGGAGGAGAGGGGGA
AACCCACACGGAATACCAATGCATGGGAAGTGGGGAAGAGAATGTAGAGT
ATAAG
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