EY676209
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY676209 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 3.674e-53 Identity = 125/238 (52.52%), Postives = 155/238 (65.13%), Query Frame = 3 Query: 123 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYRFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLSPYTEVFGLQRFRECELIHG------TLGQVGFSRCPPWLMGFRGINWQKPWKGKLSRKEHQPW-GEPPSHSP*KTFKLELRVWGKWDNWDYQKKTKNLDPGKKKHPTRGKKIFLYSPGGLGPPDPRK 812 +GTR+ P I+ SGR A FGFGK+K APKKS + + ++DRPLWYPGA +P+WLDGSLVGDY FDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP PY+EVFG+QRFRECELIHG TLG + WL G+ WQ GK+ + + G+P S +E+ V G ++Q+ + LD K+ +P G K F P GL DP K Sbjct: 15 MGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVE----WL---TGVTWQD--AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIG---YIEFQRNAE-LDSEKRLYP--GGKFF--DPLGLA-ADPEK 234
BLAST of EY676209 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 2.229e-50 Identity = 126/239 (52.72%), Postives = 154/239 (64.44%), Query Frame = 3 Query: 123 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYRFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLSPYTEVFGLQRFRECELIHG------TLGQVGFSRCPPWLMGFRGINWQKPWKGKLSRKEHQPW-GEPPSHSP*KTFKLELRVWGKWDNWDYQKKTKNLDPGKKKHPTRGKKIFLYSPGGLGPPDPRKK 815 +GTR+ DI SNS R ARFGFG +K +PKK+K + SDRPLW+PGAK+PE+LDGSLVGDY FDPFGLGKPAEYLQ+D DSLDQNLAKN G++IGTR EA D +STP PY+EVFGLQRFRECELIHG TLG + WL G+ WQ GK+ + + G+P S +E+ V G ++Q+ + LD K+ +P G K F P GL DP KK Sbjct: 14 MGTRVVSDISSNSSRFTARFGFGTKKASPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVE----WL---TGVTWQD--AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIG---YIEFQRNAE-LDSEKRLYP--GGKFF--DPLGLA-SDPVKK 232
BLAST of EY676209 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 2.306e-47 Identity = 117/243 (48.15%), Postives = 147/243 (60.49%), Query Frame = 3 Query: 126 GTRLPDIYSNSGRIQARFGF--GKRKTAP--KKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYRFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLSPYTEVFGLQRFRECELIH------GTLGQVGFSRCPPWLMGFRGINWQKPWKGKLSRKEHQPW-GEPPSHSP*KTFKLELRVWGKWDNWDYQKKTKNLDPGKKKHPTRGKKIFLYSPGGLGPPDPRKKKT 821 G R+ D +GR+QARFGF GK+K AP KKS+Q DR +W+PGA PEWLDGS++GD FDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG E+S+++ TP PYTEVFG+QRFRECELIH GTLG + + GI WQ GK+ E + G+P S +E+ V G ++Q+ ++ LDP K+ +P + P GL DP K T Sbjct: 14 GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIA-------VEALTGIAWQD--AGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVG---YIEFQRNSE-LDPEKRIYPGG-----YFDPLGLA-ADPEKLDT 237
BLAST of EY676209 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 97.8265 bits (242), Expect = 9.133e-20 Identity = 54/113 (47.79%), Postives = 63/113 (55.75%), Query Frame = 3 Query: 192 RKTAPKKSKQSSGSSDRP-----LWYPGAKAPEWLDGSLVGDYRFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LSPYTEVFGLQRFRECELIHG 509 +K A +S G R LW P PEWLDGSL GD FDP GL KP+E++ D DQN AKN G + D S+ L+PY+EVFGL RFRECELIHG Sbjct: 29 KKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHG 141 The following BLAST results are available for this feature:
BLAST of EY676209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY676209 ID=EY676209; Name=EY676209; organism=Citrus sinensis; type=EST; length=928bpback to top |