EY676209

Overview
NameEY676209
Unique NameEY676209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676209 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.674e-53
Identity = 125/238 (52.52%), Postives = 155/238 (65.13%), Query Frame = 3
Query:  123 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYRFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLSPYTEVFGLQRFRECELIHG------TLGQVGFSRCPPWLMGFRGINWQKPWKGKLSRKEHQPW-GEPPSHSP*KTFKLELRVWGKWDNWDYQKKTKNLDPGKKKHPTRGKKIFLYSPGGLGPPDPRK 812
            +GTR+ P I+  SGR  A FGFGK+K APKKS + + ++DRPLWYPGA +P+WLDGSLVGDY FDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP  PY+EVFG+QRFRECELIHG      TLG +       WL    G+ WQ    GK+   +   + G+P   S      +E+ V G     ++Q+  + LD  K+ +P  G K F   P GL   DP K
Sbjct:   15 MGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVE----WL---TGVTWQD--AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIG---YIEFQRNAE-LDSEKRLYP--GGKFF--DPLGLA-ADPEK 234          
BLAST of EY676209 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.229e-50
Identity = 126/239 (52.72%), Postives = 154/239 (64.44%), Query Frame = 3
Query:  123 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYRFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLSPYTEVFGLQRFRECELIHG------TLGQVGFSRCPPWLMGFRGINWQKPWKGKLSRKEHQPW-GEPPSHSP*KTFKLELRVWGKWDNWDYQKKTKNLDPGKKKHPTRGKKIFLYSPGGLGPPDPRKK 815
            +GTR+  DI SNS R  ARFGFG +K +PKK+K  +  SDRPLW+PGAK+PE+LDGSLVGDY FDPFGLGKPAEYLQ+D DSLDQNLAKN  G++IGTR EA D +STP  PY+EVFGLQRFRECELIHG      TLG +       WL    G+ WQ    GK+   +   + G+P   S      +E+ V G     ++Q+  + LD  K+ +P  G K F   P GL   DP KK
Sbjct:   14 MGTRVVSDISSNSSRFTARFGFGTKKASPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVE----WL---TGVTWQD--AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIG---YIEFQRNAE-LDSEKRLYP--GGKFF--DPLGLA-SDPVKK 232          
BLAST of EY676209 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.306e-47
Identity = 117/243 (48.15%), Postives = 147/243 (60.49%), Query Frame = 3
Query:  126 GTRLPDIYSNSGRIQARFGF--GKRKTAP--KKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYRFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLSPYTEVFGLQRFRECELIH------GTLGQVGFSRCPPWLMGFRGINWQKPWKGKLSRKEHQPW-GEPPSHSP*KTFKLELRVWGKWDNWDYQKKTKNLDPGKKKHPTRGKKIFLYSPGGLGPPDPRKKKT 821
            G R+ D    +GR+QARFGF  GK+K AP  KKS+Q     DR +W+PGA  PEWLDGS++GD  FDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG   E+S+++ TP  PYTEVFG+QRFRECELIH      GTLG +        +    GI WQ    GK+   E   + G+P   S      +E+ V G     ++Q+ ++ LDP K+ +P        + P GL   DP K  T
Sbjct:   14 GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIA-------VEALTGIAWQD--AGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVG---YIEFQRNSE-LDPEKRIYPGG-----YFDPLGLA-ADPEKLDT 237          
BLAST of EY676209 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 9.133e-20
Identity = 54/113 (47.79%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  192 RKTAPKKSKQSSGSSDRP-----LWYPGAKAPEWLDGSLVGDYRFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LSPYTEVFGLQRFRECELIHG 509
            +K A     +S G   R      LW P    PEWLDGSL GD  FDP GL KP+E++    D  DQN AKN  G +        D  S+   L+PY+EVFGL RFRECELIHG
Sbjct:   29 KKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHG 141          
The following BLAST results are available for this feature:
BLAST of EY676209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CB4A_ARATH3.674e-5352.52Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH2.229e-5052.72Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH2.306e-4748.15Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE9.133e-2047.79Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-020-A10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676209 ID=EY676209; Name=EY676209; organism=Citrus sinensis; type=EST; length=928bp
CCACGCGTCCGGTATCGATCACTTAACCCCTTACAATTTCAATCAACACT
ACACACCCCACCGTAAGTCCCCCACAAGCCATGGCCTCAACCACAGCAGC
AGCAGCCGCCACATCATCTTTCATTGGCACCCGCCTCCCCGACATTTACT
CAAACTCGGGCCGTATCCAAGCCCGGTTCGGCTTCGGAAAGAGAAAAACA
GCACCCAAAAAGTCGAAACAGTCTTCCGGATCCTCTGATCGTCCACTTTG
GTACCCAGGAGCCAAGGCACCCGAGTGGCTCGACGGGAGCTTGGTGGGTG
ACTACAGGTTCGACCCGTTCGGGCTGGGCAAGCCAGCAGAGTACTTGCAG
TATGACTATGACTCGTTGGACCAGAACTTGGCTAAGAACCCGGCTGGCGA
TATTATTGGGACGAGGATTGAGGCCTCTGACATGCAGTCCACGCCGCTTT
CGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTC
ATTCATGGGACTTTGGGCCAGGTTGGCTTCTCCCGGTGCCCTCCCTGGTT
GATGGGCTTCCGGGGGATTAATTGGCAAAAACCCTGGAAGGGAAAATTAA
GTAGAAAGGAACATCAACCCTGGGGGGAACCACCTTCCCATTCCCCATAA
AAAACCTTTAAATTGGAATTGAGGGTTTGGGGGAAATGGGATAATTGGGA
TTACCAAAAAAAAACCAAAAATTTGGACCCGGGGAAAAAAAAACACCCAA
CCAGGGGAAAAAAAATTTTTTTATATTCCCCCGGGGGGTTGGGGCCTCCC
GATCCCCGAAAAAAAAAGACCCCCCCCTTTTTTATTTGGGAAGGAAATTT
AACGGCCCCGCGCCGCCACATGGGGCGGGGGGGAGGGGATTATTCTGGGG
GAAACCGAACGAAGAAAAACAGAAAGGA
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