EY676207

Overview
NameEY676207
Unique NameEY676207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY676207 vs. ExPASy Swiss-Prot
Match: ATB54_ARATH (Homeobox-leucine zipper protein ATHB-54 OS=Arabidopsis thaliana GN=ATHB-54 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.955e-39
Identity = 77/156 (49.36%), Postives = 99/156 (63.46%), Query Frame = 3 
Query:    3 MSRKRDKPYPSRHD----ANSXXXXXXXXXXXXXXXXXXYAKPLPPPAVVVMGLPPNCSVLDLKSRFEIYGAISRIRIDRNRLGYITYRTKDSXXXXXXXXXXXSFGITVDSQKVQVLWATDPLAQWKEAVKSGANKDIGS--SSKLLRAEVPLSR 452
            MSRKRDKPY +RH     +                      KP PPPA+VVMGLP NCSVL+LKSRFEIYG+ISRIRI ++ +G ++YRT +S           SFGI++DS+K++V+WATDPL +WKE V +G  K+  S  SSKLLR  +PL +
Sbjct:  291 MSRKRDKPYTNRHTPARISKRRRPWAPSSSEHDEIIDKPITKPPPPPALVVMGLPANCSVLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVWATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRK 446

HSP 2 Score: 39.6614 bits (91), Expect = 6.955e-39
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:  451 EHGKSLKLASAIVNPKT------SGDG---SSALKGPFKGKKIVPYDDIL 573
            +HG+S +LASAIVNP++      SGDG   S A     K + IV YDDI+
Sbjct:  446 KHGRSSRLASAIVNPRSDNTKGISGDGGISSPATTSEVKQRNIVTYDDIV 495
The following BLAST results are available for this feature:
BLAST of EY676207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATB54_ARATH6.955e-3949.36Homeobox-leucine zipper protein ATHB-54 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-020-A08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676207 ID=EY676207; Name=EY676207; organism=Citrus sinensis; type=EST; length=919bp
ACATGAGTCGCAAGCGAGACAAGCCCTACCCCTCCCGCCACGACGCTAAT
TCAGCCCCAAAACGACGTCGTCCTCTCCCTCGTCCCGCCGCCGACGATGA
TAAGCCATACGCCAAGCCGTTGCCACCTCCAGCCGTGGTGGTGATGGGCC
TGCCGCCGAACTGCTCGGTGCTTGATTTGAAGTCGAGGTTTGAGATCTAC
GGCGCCATCTCCCGCATCCGCATCGATCGCAATCGTCTCGGATACATTAC
CTACCGGACAAAAGATTCTGCTGAAGCTGCCATTGCTGCTGCCCTTGATG
CCTCCTTCGGCATCACAGTTGATTCACAAAAGGTCCAGGTTTTATGGGCA
ACAGATCCTCTAGCCCAATGGAAGGAAGCAGTGAAAAGTGGTGCCAATAA
GGACATTGGTTCATCTTCCAAGCTTTTGCGTGCTGAGGTGCCTCTCAGCA
GAACATGGAAAAAGCCTTAAGCTTGCTTCAGCTATTGTTAACCCCAAAAC
TAGCGGGGATGGGTCTTCCGCTTTAAAGGGGCCTTTCAAAGGCAAAAAAA
TCGTCCCTTATGATGACATCCTGTAACTTTCAAAACTGATTTTTGGGAGG
GATTTTCCCCCCTTTGTAAAATTTAAATTTGAATTTTATTTTTTATTTAA
AGAGGGGGGGTATGAAAAAATTGGGGACCTAAAGGTGTGGAAGGGGGGGG
GAAATTGGGGGAAAAATTTTTTTGGGTGGGGGGGGCTTTGGGTGTTTCTG
GTTTTTTTTCTTTTTAAACGGGGGGGGGGCCCAAAACCTGGCCCTACCCT
TAAAAATTTTTATTTTTGGGGGGGTTTTTTTTGGTGTGAAAATTTTGTTT
TTTTTAAAAAAGAAAGAAATCCAAGGGTGTGTTTCCTTCTGGAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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