EY676200

Overview
NameEY676200
Unique NameEY676200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length989
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY676200 vs. ExPASy Swiss-Prot
Match: RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.721e-35
Identity = 116/249 (46.59%), Postives = 150/249 (60.24%), Query Frame = 2 
Query:    5 MSPLSRGPLIQRLHQLLHSSPLKTPSYSHSPPY---IFFIRRFSTDSAFAAASEIDEEHA-SRIIEAKPGVMTDASKRTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLPVGCGQKEGKNVGTRREVGHF*SSRGFQGRGNLRGFFRAQKNGISPPWGPPLWGFRLFNSRGGQ*VGNHGVPRKKGKRVFQGGEVKRRGDFKGKGPDFRGGGIEGAAARSGGSDPEAKRDATGE 739
            M+ + RG L+ R++Q L    + TPS S S P+    F IRRFS+D+        D   A +RIIEAK G M+  SKRTG+IAVKCG+TA WDKWG RIP+S+L+VDDNIVSQVKT EKEG F+L +GCGQK+ K++ ++  VGHF  ++G   +  LR F   +   +  P G  L G R F    GQ V   G+ R KG   FQG  +KR G F G  P   G  +   + RSGGS    +RDA G+
Sbjct:    1 MAAVPRG-LLSRINQFLSIRSI-TPSSSESLPHCSSFFLIRRFSSDTGLMDGGGSDIIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHL-SKAVVGHF-RAQGVPLKRKLREFPVTEDALL--PVGTSL-GVRHFVP--GQYVDVTGITRGKG---FQGC-MKRHG-FSGM-PASHGASL---SHRSGGS--TGQRDAPGK 229
The following BLAST results are available for this feature:
BLAST of EY676200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RK3B_ARATH1.721e-3546.5950S ribosomal protein L3-2, chloroplastic OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-019-H11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676200 ID=EY676200; Name=EY676200; organism=Citrus sinensis; type=EST; length=989bp
CGGTATGTCGCCGCTCTCACGAGGCCCGCTCATTCAGCGGCTCCACCAAC
TCCTACATTCATCCCCTCTCAAGACCCCATCATATTCACATTCACCCCCT
TACATCTTCTTCATCCGCAGATTCAGCACAGACTCCGCCTTCGCTGCTGC
CTCCGAGATCGATGAGGAGCACGCCTCCAGAATCATTGAAGCTAAGCCGG
GCGTCATGACTGATGCCTCCAAACGCACCGGGCTTATTGCCGTCAAGTGT
GGAATAACCGCCACCTGGGATAAATGGGGCGCCAGGATTCCCGTCTCTGT
GCTTTTTGTCGATGATAATATCGTCTCTCAAGTTAAAACCTTTGAGAAAG
AAGGTTTCTTTTCCTTGCCGGTTGGATGCGGGCAGAAAGAAGGGAAAAAC
GTAGGGACAAGACGGGAAGTGGGGCATTTTTGAAGCTCAAGGGGGTTCCA
GGGAAGAGGAAATTTGCGGGGATTTTTCCGGGCACAAAAAAATGGAATTT
CTCCCCCTTGGGGACCTCCACTTTGGGGATTTCGTCTTTTTAATTCCCGT
GGGGGCCAATAGGTTGGAAATCACGGGGTTCCCCGCAAAAAGGGGAAAAG
GGTTTTTCAGGGGGGGGAAGTGAAAAGAAGGGGGGATTTTAAAGGGAAAG
GGCCCGACTTCCGTGGGGGGGGGATAGAGGGAGCCGCAGCAAGAAGTGGG
GGGAGCGACCCGGAGGCAAAAAGGGATGCCACCGGGGAGAAAGGAATATT
AAGGGGGGGGCAAAAAAAAAAAGGCGGGGAGGGGGAAAGGGGGGGGGGGA
AAAGCGAAGAAAAGACACCGCGAAATACATTTATTAAGGTGGGGTGTCTT
ATACACACTACATCAGGACCTACATTTAGAAGTGATTTTTTTTGTTAGTC
ATTGTAGGGATGGGTAGGAAGATCAAGCCATATGTATGGTACCCAGCCAG
AGGGATGAACATTTCCATAAGCGGAGGAGAGAAAAAGAA
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