EY676198

Overview
NameEY676198
Unique NameEY676198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676198 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.047e-19
Identity = 59/128 (46.09%), Postives = 68/128 (53.12%), Query Frame = 3
Query:   45 ISMATQAGLFTPSIITTKTSKLLLNPWXXXXXXXXXXXXXXXXXMAQRTVRXXXXXXXXXXXXXXXXVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWGVAKGNKIF*EWPTWVEAAIYEG 428
            ++MATQA LFTP +   K++     PW                    R +R                 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITW   K  +IF E PT   A + +G
Sbjct:    1 MAMATQASLFTPPLSVPKSTTA---PWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPK-EQIF-EMPTGGAAIMRQG 123          
BLAST of EY676198 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.198e-19
Identity = 63/128 (49.22%), Postives = 71/128 (55.47%), Query Frame = 3
Query:   45 ISMATQAGLFTPSIITTKTSKLLLNPWXXXXXXXXXXXXXXXXXMAQRTVRXXXXXXXXXXXXXXXXVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWGVAKGNKIF*EWPTWVEAAIYEG 428
            ++MATQA LFTP++   K+S     PW                  A R +R                VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITW   K  +IF E PT   A + EG
Sbjct:    1 MAMATQASLFTPALSAPKSSA----PWKQSLASFSPKQLKSTVS-APRPIRAMAEEAATKEAEAP--VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPK-EQIF-EMPTGGAAIMREG 119          
BLAST of EY676198 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.299e-17
Identity = 67/170 (39.41%), Postives = 86/170 (50.59%), Query Frame = 3
Query:   45 ISMATQAGLFTPSIITTKTSKLLLNPWXXXXXXXXXXXXXXXXXMAQRTVRXXXXXXXXXXXXXXXXVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWGVAKGNKIF*EWPTWVEAAIYEGKGPKLALKFGLGKKQVAWASLVLKIWKN*KYKESSYPIFLQG 554
            ++MATQA LFTPS+ T K++ + + PW                 +   +                   GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITW   K  +IF E PT   A + E  GP L     L +K+   A L  ++    K K   Y +F  G
Sbjct:    1 MAMATQATLFTPSLSTPKSTGISI-PWKQSSTLSFLTSKPH---LKAASSSRSFKVSAEAETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPK-EQIF-EMPTGGAAIMRE--GPNL---LKLARKEQCLA-LGTRLRSKYKIKYQFYRVFPNG 158          
BLAST of EY676198 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.849e-16
Identity = 46/61 (75.41%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  246 VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWGVAKGNKIF*EWPTWVEAAIYEG 428
            VGFTPPQLDPNTPSPIF GSTGGLLRKAQVEEFYVITW   K  +IF E PT   A + EG
Sbjct:   61 VGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPK-EQIF-EMPTGGAAIMREG 119          
BLAST of EY676198 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.849e-16
Identity = 46/61 (75.41%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  246 VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWGVAKGNKIF*EWPTWVEAAIYEG 428
            VGFTPPQLDPNTPSPIF GSTGGLLRKAQVEEFYVITW   K  +IF E PT   A + EG
Sbjct:   65 VGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPK-EQIF-EMPTGGAAIMREG 123          
BLAST of EY676198 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.198e-15
Identity = 55/102 (53.92%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  249 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWGVAKGNKIF*EWPTWVEAAIYEGKGPKLALKFGLGKKQVAWASLVLKIWKN*KYKESSYPIFLQG 554
            GFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW   K  +IF E PT   A + E  GP L     L +K+   A L  ++    K K   Y +F  G
Sbjct:   70 GFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPK-EQIF-EMPTGGAAIMRE--GPNL---LKLARKEQCLA-LGTRLRSKYKIKYQFYRVFPSG 163          
BLAST of EY676198 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.487e-15
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  249 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWGVAKGNKIF*EWPTWVEAAIYEG 428
            GF PPQLDP+TPSPIFGGSTGGLLRKAQVEEFYVITW   K  ++F E PT   A + EG
Sbjct:   63 GFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPK-EQVF-EMPTGGAAIMREG 120          
BLAST of EY676198 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.262e-13
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  252 FTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWGVAKGNKIF*EWPTWVEAAIYEGKGPKLALKFGLGKKQVAWASLVLKIWKN*KYKESSYPIFLQG 554
            +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITW  AK  +IF E PT   A + +  GP L LKFG   K+    +L  ++    K     Y +F  G
Sbjct:   53 WTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITW-EAKKEQIF-EMPTGGAAIMRQ--GPNL-LKFG---KKEQCLALTTQLRNKFKLTPCFYRVFPDG 145          
The following BLAST results are available for this feature:
BLAST of EY676198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSAD_SOLLC1.047e-1946.09Photosystem I reaction center subunit II, chloropl... [more]
PSAD_NICSY5.198e-1949.22Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CUCSA8.299e-1739.41Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH1.849e-1675.41Photosystem I reaction center subunit II-2, chloro... [more]
PSAD1_ARATH1.849e-1675.41Photosystem I reaction center subunit II-1, chloro... [more]
PSAD_SPIOL1.198e-1553.92Photosystem I reaction center subunit II, chloropl... [more]
PSAD_HORVU3.487e-1571.67Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CHLRE4.262e-1350.50Photosystem I reaction center subunit II, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-019-H08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676198 ID=EY676198; Name=EY676198; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGACACATCTTCCCCTGCTCACTAGAAAATCTACAATTTCC
ATGGCAACCCAAGCAGGCCTCTTTACCCCAAGTATTATCACCACCAAAAC
AAGCAAGCTTCTTTTGAACCCATGGAAGCCAACCTCATCCTTTTCATTCA
CCAGTCCCAAACCCCTCACCTTCTCCATGGCTCAAAGAACCGTCAGAGCC
GCAGCCGCCGAAGAAAAAACCGAAGCACCCACGAAGGAGGCTCCAGTAGG
CTTCACCCCACCGCAGCTAGACCCAAACACCCCATCCCCAATCTTCGGAG
GAAGCACTGGGGGATTGTTGAGAAAGGCCCAAGTTGAAGAATTCTATGTC
ATCACATGGGGAGTCGCCAAAGGAAACAAAATCTTTTGAGAATGGCCGAC
CTGGGTGGAAGCTGCCATTTATGAAGGCAAGGGTCCTAAACTTGCCTTAA
AGTTTGGCCTAGGAAAGAAACAAGTGGCTTGGGCTTCTTTGGTACTAAAA
ATTTGGAAGAATTAAAAGTACAAAGAATCAAGTTACCCAATTTTTTTACA
AGGGGTCCTTTTTCCTAAAAAGGGGGGGAAGGGTTTCAAATAAACCTTTT
CCACCCCCCAAAAGGGAAGGGGGAATTTTTTAAACCCCCGAAAAAAAAAA
AGTGGAAAAACCCCCCGGGGTTCCCCCCAAGGGGGGGGAAGGGGGGGGAG
AGGGGAAAAATTTTTACACAAAATTTATAAAATTATGGGGAAAAAAAAAA
AAAATGGACCCAAATGATCCCCCCCACCAACAACCGGAGAGGGGGGTATA
AAAAAAAGATTTTCCCAAAAAAGGGGGGGGAGGGAAGAAAAAAAACAACA
AAA
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