EY676192

Overview
NameEY676192
Unique NameEY676192
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676192 vs. ExPASy Swiss-Prot
Match: HEM6_SOYBN (Coproporphyrinogen-III oxidase, chloroplastic OS=Glycine max GN=CPX PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.343e-33
Identity = 65/70 (92.86%), Postives = 66/70 (94.29%), Query Frame = 1
Query:    1 AWQQFPMGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 210
            AWQQ   GRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDH P+EGSEEWKLLDACINPKEWI
Sbjct:  316 AWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWI 385          
BLAST of EY676192 vs. ExPASy Swiss-Prot
Match: HEM6_TOBAC (Coproporphyrinogen-III oxidase, chloroplastic OS=Nicotiana tabacum GN=CPX PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.220e-33
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 1
Query:    1 AWQQFPMGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 210
            AWQQ   GRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDH P+EG+EEWKLLDACINPKEWI
Sbjct:  328 AWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGTEEWKLLDACINPKEWI 397          
BLAST of EY676192 vs. ExPASy Swiss-Prot
Match: HEM6_HORVU (Coproporphyrinogen-III oxidase, chloroplastic OS=Hordeum vulgare GN=CPX PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.220e-33
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 1
Query:    1 AWQQFPMGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 210
            AWQQ   GRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDH P+EGSEEWKLLDACINPKEW+
Sbjct:  322 AWQQVRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWL 391          
BLAST of EY676192 vs. ExPASy Swiss-Prot
Match: HEM6_ARATH (Coproporphyrinogen-III oxidase, chloroplastic OS=Arabidopsis thaliana GN=CPX PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.519e-32
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 1
Query:    1 AWQQFPMGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 210
            AWQQ   GRYVEFNLVYDRGTTFGLKTGGRIESILVSLPL+ARWEYDH P+EG+EEWKLLDACINPKEWI
Sbjct:  317 AWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLSARWEYDHKPEEGTEEWKLLDACINPKEWI 386          
BLAST of EY676192 vs. ExPASy Swiss-Prot
Match: HEM6_ORYSJ (Coproporphyrinogen-III oxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=CPX PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 8.333e-31
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 1
Query:    1 AWQQFPMGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 210
            AWQQ   GRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARW+YDH P+EG+EE KLLDACINPKEW+
Sbjct:  328 AWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWQYDHTPEEGTEERKLLDACINPKEWL 397          
BLAST of EY676192 vs. ExPASy Swiss-Prot
Match: HEM6_RAT (Coproporphyrinogen-III oxidase, mitochondrial OS=Rattus norvegicus GN=Cpox PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.971e-20
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    4 WQQFPMGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 210
            WQQ   GRYVEFNLVYDRGT FGL T G RIESIL+SLPLTARWEY H+P E S+E ++L+   +PK+W+
Sbjct:  373 WQQLRRGRYVEFNLVYDRGTKFGLFTPGSRIESILMSLPLTARWEYMHSPPENSKEAEILEVLRHPKDWV 442          
BLAST of EY676192 vs. ExPASy Swiss-Prot
Match: HEM6_MOUSE (Coproporphyrinogen-III oxidase, mitochondrial OS=Mus musculus GN=Cpox PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.618e-20
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    4 WQQFPMGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 210
            WQQ   GRYVEFNL+YDRGT FGL T G RIESIL+SLPLTARWEY H+P E S+E ++L+   +PK+W+
Sbjct:  373 WQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMHSPPENSKEAEILEVLRHPKDWV 442          
BLAST of EY676192 vs. ExPASy Swiss-Prot
Match: HEM6_HUMAN (Coproporphyrinogen-III oxidase, mitochondrial OS=Homo sapiens GN=CPOX PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 1.129e-19
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    4 WQQFPMGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 210
            WQQ   GRYVEFNL+YDRGT FGL T G RIESIL+SLPLTARWEY H+P E S+E ++L+   +P++W+
Sbjct:  384 WQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMHSPSENSKEAEILEVLRHPRDWV 453          
BLAST of EY676192 vs. ExPASy Swiss-Prot
Match: HEM6_DROME (Coproporphyrinogen-III oxidase OS=Drosophila melanogaster GN=Coprox PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.290e-19
Identity = 46/70 (65.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    4 WQQFPMGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 210
            WQ    GRYVEFNL+YDRGT FGL T G R ESIL+SLPL ARWEY H PK  SEE KL+    NPK+W+
Sbjct:  321 WQLLRRGRYVEFNLIYDRGTKFGLYTPGARYESILMSLPLHARWEYMHEPKSQSEEGKLMKVLKNPKDWV 390          
BLAST of EY676192 vs. ExPASy Swiss-Prot
Match: HEM6_YEAST (Coproporphyrinogen-III oxidase OS=Saccharomyces cerevisiae GN=HEM13 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 8.090e-18
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    4 WQQFPMGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 210
            WQ    GRYVEFNL+YDRGT FGL+T G R+ESIL+SLP  A W Y+H+P  GS E KLL+    P+EW+
Sbjct:  258 WQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHASWLYNHHPAPGSREAKLLEVTTKPREWV 327          
The following BLAST results are available for this feature:
BLAST of EY676192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
HEM6_SOYBN2.343e-3392.86Coproporphyrinogen-III oxidase, chloroplastic OS=G... [more]
HEM6_TOBAC5.220e-3391.43Coproporphyrinogen-III oxidase, chloroplastic OS=N... [more]
HEM6_HORVU5.220e-3391.43Coproporphyrinogen-III oxidase, chloroplastic OS=H... [more]
HEM6_ARATH1.519e-3290.00Coproporphyrinogen-III oxidase, chloroplastic OS=A... [more]
HEM6_ORYSJ8.333e-3187.14Coproporphyrinogen-III oxidase, chloroplastic OS=O... [more]
HEM6_RAT2.971e-2067.14Coproporphyrinogen-III oxidase, mitochondrial OS=R... [more]
HEM6_MOUSE6.618e-2065.71Coproporphyrinogen-III oxidase, mitochondrial OS=M... [more]
HEM6_HUMAN1.129e-1964.29Coproporphyrinogen-III oxidase, mitochondrial OS=H... [more]
HEM6_DROME4.290e-1965.71Coproporphyrinogen-III oxidase OS=Drosophila melan... [more]
HEM6_YEAST8.090e-1860.00Coproporphyrinogen-III oxidase OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-019-H02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676192 ID=EY676192; Name=EY676192; organism=Citrus sinensis; type=EST; length=889bp
GCATGGCAACAGTTCCCCATGGGACGTTACGTAGAATTCAACTTGGTTTA
TGATCGAGGTACAACATTTGGGCTGAAGACAGGAGGTCGAATTGAAAGTA
TTCTTGTTTCTCTTCCACTGACTGCACGGTGGGAATACGACCATAACCCG
AAAGAGGGAAGTGAAGAATGGAAATTATTAGATGCATGCATCAACCCAAA
GGAATGGATTTAACATTTATCTAAATAATGCCTTTGTATCATCTGGAGAG
TTATCTATGTACTTTTCTTTCTTTCTTCTTCTTCTTCCATTTTTTTTTCT
TGGAAATATCCCTCCCACCCCCCCACCCCCTTTTCGGCATTAGAAAATGC
AAGGTACTGATCATCAGATGTGTTAAAAGGGAGTTACTTAGAAAGGATAA
CAAAAGAAAAAAGACTAAAAAGGAAGAAACAGTAAAAATCTGCAAAATTT
ACAAAATCCTACAACCCAATAACTAAACGATCTAACAACGAAGAATAAAA
GTTGGATTGACGCTGATATAATAGTAACAATGTTGGTAAACATGATACTG
CACGTAGACATACTTTCAATAACGTACAATAGAAAAAATACAATGAGGAC
AGATGATTTAACAGCTGTATAGATCGGGAGAAAATAATTGTATTAGACCA
ACTTAAAATATCGCGCAACGGTCACAACCTTCATAACATCGATAAAATAT
ATAGCAGAAGCAGGCGACCCTCTATCTCACTTCATTTTGACCGTGATCTA
GAAGGGAGTATGAAATAATAGTTTCACAGTAACATAGATAGACAACAAAT
GGTAGAGAGAGCTTTGTGTGTGATTGTCACGATAGAATGTGGTAAAGGTG
ATTAATAATTGAGCTATTAGTTGTGACTATAGACGATAT
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