EY676013

Overview
NameEY676013
Unique NameEY676013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY676013 vs. ExPASy Swiss-Prot
Match: BH035_ARATH (Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.123e-27
Identity = 67/122 (54.92%), Postives = 91/122 (74.59%), Query Frame = 2 
Query:   14 QEKRIRDEIMELESG-KSKKNFGFDFEQELPVLLRPKK-KKIDRFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEADEEE 373
            +EK++  EI ELES  KS  +F  DF+++L V +  KK K++D     +GS T+ +E+LEL+V  MGE+ +VVSVTC+KRTDTMVKLCE FESL LKI+T+N+T+ +G +  T FIEADEEE
Sbjct:  103 EEKKLEAEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLD-----SGSSTSLIEVLELKVTFMGERTMVVSVTCNKRTDTMVKLCEVFESLNLKILTSNLTSFSGMIFHTVFIEADEEE 219
[Close]
BLAST of EY676013 vs. ExPASy Swiss-Prot
Match: BH027_ARATH (Transcription factor bHLH27 OS=Arabidopsis thaliana GN=BHLH27 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.324e-13
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:    8 VRQEKRIRDEIMELESGKSKK---------NFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIE 358
            + QEK +  EI ELES  +           NF     Q+       + KK  +   S   +  P+E+LE++V  MGEK +VV +TCSK+ +TMV+LC+  ESL L I+T N ++   RL  T F++
Sbjct:  100 IDQEKTLEAEIRELESRSTLLENPVRDYDCNFAETHLQDFSDNNDMRSKKFKQMDYSTRVQHYPIEVLEMKVTWMGEKTVVVCITCSKKRETMVQLCKVLESLNLNILTTNFSSFTSRLSTTLFLQ 225
The following BLAST results are available for this feature:
BLAST of EY676013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BH035_ARATH6.123e-2754.92Transcription factor bHLH35 OS=Arabidopsis thalian... [more]
BH027_ARATH1.324e-1336.51Transcription factor bHLH27 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-017-F11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676013 ID=EY676013; Name=EY676013; organism=Citrus sinensis; type=EST; length=947bp
CCCACGCGTCCGGCAAGAGAAGAGGATTCGAGATGAAATAATGGAACTCG
AGTCTGGGAAATCGAAGAAGAATTTTGGGTTTGATTTCGAGCAGGAGCTG
CCTGTTTTGTTGAGACCAAAGAAGAAGAAAATTGACCGGTTCTTTGATTC
GGCAGGATCAAGAACTGCTCCTGTTGAAATCCTTGAACTTCGGGTAAAAA
CAATGGGAGAAAAGATATTGGTGGTGAGCGTAACTTGTAGCAAAAGAACA
GATACAATGGTTAAATTGTGTGAGGCCTTTGAATCTTTAAAGCTAAAAAT
CATCACCGCAAATATCACCGCTGTTGCTGGCAGGCTTTTGAAGACAGCCT
TTATTGAGGCTGATGAAGAGGAGATGGGACGATTTGAAGATTAAAATTCA
AACAGCCATTCAAGCTCTCAATGATCCATCAAGTCCCAGGAGCGTCTAAT
GTCCCCAGCTTCCAACAACCTTCAATTCGGGGGATGGTGTGAGTTTTTTG
GAAGGGGTTTTTGGAAAGGCTTTTTTACACCAATCACCTCCCAAAACCCG
CCTTATTTTTTCTCTTTTAAGTGGCTTAGAGAAAGAGAAAAAAATTTTTC
AGGCCCCCCCCCCCCCCCCACAAACCCAGAAAATATATGAGGGAGAAAAA
GAAAAGAGGGAAAAGAGGGAGAAAAAGAGGTGAGGAGGTGAACCAAGACA
AACAAACAAAGATATGTGTTAAGGAGCGTAAAACCGTCATATAAGAGAAT
CGAGAAAAAGGAGAATGCGAGAGAGAGCTCGCGCGTTGATGAGGCGGACA
ATAAATTTGACAGGGGATGATAGTAGAGAAAAAAATACAAAAGGTATCAA
AACGGATAATGAGCGAAAACGAATATAATAAAAACAGGATGGAAGACAAA
CCAGAGATATTGAAAGAACTAGAACGGAGAATAAAACAAAAGAATAG
back to top