EY676012

Overview
NameEY676012
Unique NameEY676012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY676012 vs. ExPASy Swiss-Prot
Match: LIRP1_ORYSJ (Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.911e-22
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 3 
Query:   51 AIYTPKLVGSSL---ASRRSAIKV---AATTSNDPSTFDYNSAFSVFPAEACEVIGGDACSAEMYPEAKLKPEAKNDTSTTASESIEREYLEYNDTNTVFKGEACDDLGGTFCE 374
            A+    + G SL   A RR A++V   AA  + + +  DY+S  SVFP EAC++IGG+AC+ +MYPEAKL   A    S  A+E ++R+YL Y++  TVF  EACDDLGG FC+
Sbjct:   13 AVLPAAVKGRSLQIQAPRRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQMYPEAKLSSSAAVAVSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFCK 126
The following BLAST results are available for this feature:
BLAST of EY676012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LIRP1_ORYSJ9.911e-2247.37Light-regulated protein OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-017-F10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676012 ID=EY676012; Name=EY676012; organism=Citrus sinensis; type=EST; length=937bp
CACCAACAACGCTTGTCCCTTTAACAACCTCCAAGAACTTTTCCCAAGTG
GCCATTTATACTCCAAAGCTAGTAGGCAGCTCACTTGCTTCCAGACGCAG
CGCAATCAAAGTAGCTGCTACAACAAGCAATGACCCGTCCACATTTGATT
ACAATTCTGCCTTCTCGGTGTTTCCAGCAGAGGCATGTGAGGTAATCGGT
GGAGATGCGTGCTCGGCAGAGATGTATCCTGAGGCGAAGTTGAAACCAGA
GGCCAAGAACGACACATCAACAACTGCCTCAGAATCCATTGAGAGAGAGT
ATTTAGAGTACAACGATACAAACACGGTTTTCAAAGGAGAGGCTTGTGAT
GATCTTGGAGGAACGTTCTGTGAACGCGAGTACCCGAGAGGAGTCTACTA
GAACTAGAAAGAACGTAATATCGGGAAAACAACTATTTGATGCTTTTACT
GTATAAAGTTTTACCCCAAGGAACGGGGGTGCATATGGTACAATTTCCTT
TTTTTTCTAAAATATTTTTAATTGAATGCCGAAAAAAAAACCAAAATGGC
CTTTGTGCTAAGCCTAGTTCAAACGAATCTGGGACGGCAAGAATTTTAAG
TGGGGGAAAAGGGGGATAAAAGAAATTATAAATTGATTTGGGGGAAAAAA
TTAAAGATAAAGATTGATAAGGGGGAGAAAAAGAATTTTTTTTGGTTCCT
GGGAGAAAAGACAAGAAGAGAAAAAATGAGAAAAGAAAAAGAAAATGCAA
ACAGGAGGGGGGCGGGGGCGCACTTAAAGGAGAGACCACAATTTGACAAC
AGGCAGCGAGATGACAGCGCATATATCCAGCTTTTGGAAAGGAAAACCCA
AAAAATCTAAAATAACGAAAAAGGCACATGTACATTATAAAAACGAATAA
GGATAGAAGGAGAAAAAAAAATACCAACGTGAAATAT
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