EY675927

Overview
NameEY675927
Unique NameEY675927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675927 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.611e-52
Identity = 104/152 (68.42%), Postives = 125/152 (82.24%), Query Frame = 1
Query:  115 ASSSLFTPSTITVRKHQISPSSISFQGLRPLNTR-AKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVWLYIVDVLAWGSIGHIVAYYILATFSNGYE 567
            ++S+L +P+T +      +P+SISF GLRPL    + + LPKL+T+ +++S   ++AEL+  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+   IVDVLAWGSIGHIVAYYILAT SNGY+
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYD 155          
BLAST of EY675927 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.736e-42
Identity = 94/130 (72.31%), Postives = 104/130 (80.00%), Query Frame = 1
Query:  184 SFQGLRPL--NTRAKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVWLYIVDVLAWGSIGHIVAYYILATFSNGYE 567
            SF GLRPL  N  +      L+ S+ R S    +AEL+  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPV   IVDVLAWGSIGHIVAYYILAT SNGY+
Sbjct:   36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYD 163          
BLAST of EY675927 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.072e-36
Identity = 83/134 (61.94%), Postives = 100/134 (74.63%), Query Frame = 1
Query:  166 ISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVWLYIVDVLAWGSIGHIVAYYILATFSNGYE 567
            +SP +++   L P + RA      ++  A+R+     +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPV   +VDVLAWGSIGHIVAYYILAT SNGY+
Sbjct:    9 LSPPAVAGLRLAP-SPRAAASFRGVSPPARRSV--AARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYD 138          
BLAST of EY675927 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.135e-19
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  289 NTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVWLYIVDVLAWGSIGHIVAYYILATFSNGY 564
            NT  +IS ST   L LGRFVF  FQR  V++ GLPEQNGV          + + S+LK+NDP    +VDVLAWG++GH V ++ILAT +NGY
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGY 108          
BLAST of EY675927 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.029e-12
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 1
Query:  283 ELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 399
            ELN  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
The following BLAST results are available for this feature:
BLAST of EY675927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSAG_ARATH8.611e-5268.42Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL4.736e-4272.31Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU5.072e-3661.94Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU1.135e-1952.17Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA1.029e-1294.87Photosystem I reaction center subunit V (Fragment)... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-016-F09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675927 ID=EY675927; Name=EY675927; organism=Citrus sinensis; type=EST; length=893bp
CGGACGCGTGGGAAATCTATCATAATCCAGGAACTCAAAAACTCCATCAT
CCATCAACGCATCAACCAGAACACAAAAAAGAAGGAAAAAGAGGGGAAAA
AAAGAAAAATGGCAGCCTCATCCTCCTTGTTCACACCCTCCACCATCACC
GTCCGAAAACACCAAATTTCACCCTCCAGCATCTCATTCCAAGGCCTAAG
ACCCCTCAACACCAGGGCCAAAACCCCCCTCCCCAAGCTCGCCACCTCCG
CCAAAAGAAACAGCTTCGGCGGCATTAAAGCTGAGCTGAACACACCACTT
GTCATCAGCCTCAGCACTGGCCTCTCCTTGTTCTTGGGCAGGTTCGTCTT
CTTCAACTTCCAAAGAGAGAACGTGGCCAAACAAGGCTTGCCCGAGCAGA
ATGGAGTCACCCACTTTGAAGCCGGTGATGTTCGTGCCAAGGAATATGTT
AGCCTCCTCAAATCCAACGACCCAGTTTGGCTTTACATTGTTGATGTTCT
CGCTTGGGGTTCCATTGGCCATATTGTCGCTTACTACATCTTGGCCACCT
TCAGCAACGGCTATGAATCCAATTCTTTGGTTGAATTTGGTATTTGGACT
GTCCCCCTTTTGGCCCTTTTAATTTTCTAAATTTTCCAAGTGTTGGCCCT
TTGTAAAATTTAAAAAATTTCCTACCCTTTTAGGGGATGAAACCCGGAGA
ATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCCCCCC
CTAAAAGAATCAAACTTTAAATAACCCGGGGGGTGGGCCAACCCTAAAAC
CTTTTTCTAAGGTGGGCCCCCAAAAAATTTAAAATTTTCCGGGCGCGCCT
CTTTTTTAAAAACCCCCTGGGGGGGGGGGGGAAAAACACCCGG
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