EY675887

Overview
NameEY675887
Unique NameEY675887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length988
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675887_ssr337 microsatellite EY675887_ssr337:337..351. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675887 vs. ExPASy Swiss-Prot
Match: RBP1A_ARATH (Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 9.083e-37
Identity = 73/104 (70.19%), Postives = 88/104 (84.62%), Query Frame = 3
Query:    3 RVRKTLKISSNHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEENKTEDKSRAE 314
            R  KTLKI +NH V   MSVQEH GN+KSCVWHA D+ADGELKDELFCIRF S+ENCK+FM+   EVAES+++KEE+KDA+ TAGLLEKL+VEE KTE+K+ A+
Sbjct:   90 RQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAADTAGLLEKLTVEETKTEEKTEAK 193          
BLAST of EY675887 vs. ExPASy Swiss-Prot
Match: RBP1B_ARATH (Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 4.508e-36
Identity = 74/100 (74.00%), Postives = 86/100 (86.00%), Query Frame = 3
Query:    3 RVRKTLKISSNHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEENKTEDK 302
            R  KTLKI +NHLV   MSVQEHAGNDKSCVWHA D++DGELKDELFCIRF SVENCK+FM+   EVAES+++KEE+KDAS TAGLLEKL+VEE ++E K
Sbjct:   92 RQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDFSDGELKDELFCIRFASVENCKAFMQKFKEVAESEEEKEESKDASDTAGLLEKLTVEEKESEKK 191          
BLAST of EY675887 vs. ExPASy Swiss-Prot
Match: RBP1C_ARATH (Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.501e-31
Identity = 63/102 (61.76%), Postives = 81/102 (79.41%), Query Frame = 3
Query:    3 RVRKTLKISSNHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEENKTEDKSR 308
            R  KTLKI +NHL+   MSVQEH+GN+KSC+WHA D++DGELKDELFCIRF S+ENCK+FME   E+AESQ+  +E+      AGL+E LSVEEN +E+K++
Sbjct:   89 RQSKTLKICANHLISSGMSVQEHSGNEKSCLWHATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSVEENISEEKAK 190          
BLAST of EY675887 vs. ExPASy Swiss-Prot
Match: RANG_MOUSE (Ran-specific GTPase-activating protein OS=Mus musculus GN=Ranbp1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.743e-12
Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = 3
Query:   12 KTLKISSNHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSFM----EMVHEVAESQKK-KEENKDASATAGLLEKLSVEENKTEDKSRAE 314
            KTLKI +NH + PMM ++ +AG+D++ VW+  AD+AD   K EL  IRF + EN + F     E   E+ E +KK   +N +A   A  LE LSV E + E + ++E
Sbjct:   94 KTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKGPGKNDNAEKVAEKLEALSVREAREEAEEKSE 200          
BLAST of EY675887 vs. ExPASy Swiss-Prot
Match: RANG_HUMAN (Ran-specific GTPase-activating protein OS=Homo sapiens GN=RANBP1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.725e-11
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   12 KTLKISSNHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSFM----EMVHEVAESQKK--KEENKDASATAGLLEKLSVEENKTED 299
            KTLKI +NH + PMM ++ +AG+D++ VW+  AD+AD   K EL  IRF + EN + F     E   E+ E +KK    +N  A   A  LE LSV+E   ED
Sbjct:   94 KTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKED 196          
The following BLAST results are available for this feature:
BLAST of EY675887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RBP1A_ARATH9.083e-3770.19Ran-binding protein 1 homolog a OS=Arabidopsis tha... [more]
RBP1B_ARATH4.508e-3674.00Ran-binding protein 1 homolog b OS=Arabidopsis tha... [more]
RBP1C_ARATH1.501e-3161.76Ran-binding protein 1 homolog c OS=Arabidopsis tha... [more]
RANG_MOUSE7.743e-1241.12Ran-specific GTPase-activating protein OS=Mus musc... [more]
RANG_HUMAN1.725e-1142.72Ran-specific GTPase-activating protein OS=Homo sap... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-016-C05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675887 ID=EY675887; Name=EY675887; organism=Citrus sinensis; type=EST; length=988bp
CACGCGTCCGTAAGACTCTCAAGATCTCCTCCAATCATCTCGTATTGCCG
ATGATGTCCGTGCAAGAGCATGCTGGAAATGATAAGTCGTGCGTGTGGCA
TGCTGCTGACTATGCTGACGGTGAATTGAAGGATGAGCTTTTCTGCATCA
GATTTGGATCCGTTGAGAATTGCAAAAGCTTTATGGAAATGGTTCATGAA
GTTGCTGAATCCCAAAAAAAGAAAGAGGAGAACAAAGATGCATCTGCAAC
TGCTGGTCTTCTTGAGAAATTGAGTGTTGAAGAAAATAAAACTGAAGACA
AATCTAGGGCAGAGGGGGAGGTGCCCAAAGAGGAGAAGGAGGAGGAGGAG
GTGCCCAAAGAGGAGAAGAAGGAATCCAAGAGTGAAGAAGCAGAGAAGAA
ACCTGAGGAGCCTGCTTCCTCAACATAGAGGACTGGGTTTGTTTTATCAC
CATATGCTTGGGCATGTGAAAAGCTTTGTTAGTCGACCTTGGTTCTCATC
CATGTCTTGGCGTATAAATCCGGTGGAAATTTTGAACCAATTTATGGGCT
GTAGTGGTTTGGGTCTGTGTCCCGTTTTGAATCTGTCCAACAAGTGGGTC
AAGCCCAAGGCCTGGTTTTGCCTGTTGGGGGGGTGTGGTTTTTTGTAGTT
TGGGTTTTTCTCAAAAAAGTTAAATTTAGGGGTTTTTCCAAAAATAATTT
TTCTGGTTTTATTGGGGGCCAAGTTCCCCTGGTATATAATATTTGGCTTT
AAGGGTTTTTTTTGGAAAAAAAAAAAAAAAAAAAATTTTCTTTTTCCCCG
GGGGGCCTTTTTTTTTTTGAGAAAAAAAAACTTTTTTTTCTGGCCCAATT
TACAAGAAAATTTTTTGGGGGTTTTTTTTTTTTTTTTTTTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGG
GGGGGGGGGGGGCCCGCCCCCCTCCCCTCTCAGAAAGA
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