EY675857

Overview
NameEY675857
Unique NameEY675857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675857 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.401e-33
Identity = 66/87 (75.86%), Postives = 72/87 (82.76%), Query Frame = 2
Query:   26 THCCTEPYVIPTNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 286
            THCC EPYVI  NRQLS MHPIYRLL PHFR+TMEIN  AR  L+ ADGIIE +FSPG++SME SS AYDKQWRFD EALP+DLI R
Sbjct:  592 THCCVEPYVIAANRQLSQMHPIYRLLHPHFRFTMEINAQARGMLICADGIIEKTFSPGEFSMEISSAAYDKQWRFDMEALPEDLIRR 678          
BLAST of EY675857 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.432e-32
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 2
Query:   26 THCCTEPYVIPTNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 286
            TH CTEPY+I  NRQLS MHP+YRLL PHFR+TMEIN  AR  L+NA GIIE SF PG+YS+E SSVAYD+QWRFD EALP+DLI R
Sbjct:  591 THACTEPYIIAANRQLSQMHPVYRLLHPHFRFTMEINAQARAMLINAGGIIEGSFVPGEYSLELSSVAYDQQWRFDMEALPEDLIRR 677          
BLAST of EY675857 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.207e-31
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 2
Query:   26 THCCTEPYVIPTNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 286
            TH C EPY+I TNRQLS MHP+YRLL PHFRYTMEIN LAR+AL+NADGIIE +F  GKYS+E SSVAY   W+F+ EALP+DLI+R
Sbjct:  560 THACVEPYIIATNRQLSRMHPVYRLLHPHFRYTMEINALAREALINADGIIEEAFLAGKYSIELSSVAYGAAWQFNTEALPEDLINR 646          
BLAST of EY675857 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 2
Query:   26 THCCTEPYVIPTNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 286
            THC  EPY+I  NRQLS MHPIY+LL PHFRYTM IN LAR  L++A GIIE SFSP KYSME SSVAYDK WRFD EALP DL+ R
Sbjct:  602 THCAVEPYIIAANRQLSEMHPIYQLLHPHFRYTMRINALARSRLISAAGIIELSFSPQKYSMELSSVAYDKLWRFDMEALPADLVRR 688          
BLAST of EY675857 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 2
Query:   26 THCCTEPYVIPTNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 286
            THC  EPY+I  NRQLS MHPIY+LL PHFRYTM IN  AR AL++A GIIE SFSP KYSME SSVAYDK WRFD EALP DL+ R
Sbjct:  585 THCAVEPYIIAANRQLSEMHPIYQLLRPHFRYTMRINARARSALISAGGIIERSFSPQKYSMELSSVAYDKLWRFDTEALPADLVRR 671          
BLAST of EY675857 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.824e-31
Identity = 62/87 (71.26%), Postives = 67/87 (77.01%), Query Frame = 2
Query:   26 THCCTEPYVIPTNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 286
            TH CTEPY+I  NRQLS MHPIYRLL PHFRYTMEIN  ARQ+LVN  GIIE+ F PGKY++E SS  Y K WRFD E LP DLI R
Sbjct:  558 THACTEPYIIAANRQLSAMHPIYRLLHPHFRYTMEINARARQSLVNGGGIIETCFWPGKYALELSSAVYGKLWRFDQEGLPADLIKR 644          
BLAST of EY675857 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.783e-28
Identity = 56/87 (64.37%), Postives = 66/87 (75.86%), Query Frame = 2
Query:   26 THCCTEPYVIPTNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 286
            TH   EPY+I TNRQLS MHP+Y+LL PH RYT+EIN  AR++L+N  GIIES F+PGKY+ME SS AY   WRFD E LP DL+ R
Sbjct:  579 THASMEPYIIATNRQLSTMHPVYKLLHPHMRYTLEINARARKSLINGGGIIESCFTPGKYAMELSSAAYKSMWRFDMEGLPADLVRR 665          
BLAST of EY675857 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.057e-27
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 2
Query:   26 THCCTEPYVIPTNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 286
            TH C EP+++  +RQLS MHPI++LLDPH RYT+EIN +ARQ L++ADG+IES F+ G+Y +E SS AY  +WRFD E LP DLI R
Sbjct:  589 THACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINAVARQTLISADGVIESCFTAGQYGLEISSAAYKNKWRFDMEGLPADLIRR 675          
BLAST of EY675857 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.804e-27
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 2
Query:   26 THCCTEPYVIPTNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 286
            TH C EP+++  +RQLS MHPI++LLDPH RYT+EIN LARQ+L++ADG+IE  F+ G Y ME S+ AY   WRFD E LP DLI R
Sbjct:  582 THACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLISADGVIEGGFTAGAYGMEMSAAAYKSSWRFDMEGLPADLIRR 668          
BLAST of EY675857 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 9.898e-26
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   26 THCCTEPYVIPTNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 286
            TH C EP++I  +RQ+S MHPI++LL PH RYT++IN LARQ L+N DG+IES F+PG   ME S+ AY + WR D E LP DLI R
Sbjct:  563 THACMEPFIIAAHRQMSAMHPIFKLLKPHMRYTLKINALARQILINGDGVIESGFTPGNVCMEMSAFAYRELWRLDQEGLPADLIRR 649          
The following BLAST results are available for this feature:
BLAST of EY675857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX22_HORVU6.401e-3375.86Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX21_HORVU2.432e-3273.56Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX23_HORVU1.207e-3172.41Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC2_ORYSJ4.587e-3173.56Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ4.587e-3173.56Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX2_ARATH7.824e-3171.26Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ARATH2.783e-2864.37Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX4_ARATH1.057e-2760.92Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH1.804e-2760.92Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ9.898e-2658.62Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-015-H09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675857 ID=EY675857; Name=EY675857; organism=Citrus sinensis; type=EST; length=857bp
TTTATTATAGGAACCTAAAGACTTAACTCATTGTTGCACAGAACCTTACG
TAATACCAACCAATCGGCAACTCAGCGTGATGCATCCAATCTATAGATTG
TTGGATCCTCATTTTCGATACACAATGGAGATCAATGGTTTGGCTCGACA
AGCTCTTGTTAATGCTGATGGAATCATTGAAAGCTCATTCTCACCTGGAA
AGTACTCTATGGAATTCAGCTCTGTTGCCTATGACAAGCAATGGCGCTTT
GACCATGAAGCACTCCCCAAAGACCTAATTAGCCGGTAAGTCACCAGGCT
ATTTTGTTATACGAAAAACATTAAACAGAAAATGGATTGATTTCATTTTT
TTTCCCGGATATTTATCCAGGNNNNNNAANNNAAAAAAAAAAAAAAAAAA
AAAAAAAAGGGAGGGGGAGGGAGGANGGAGAAAAAGGNGAAAAGAGAAAG
AGAAGATTAGGGGAGAGGGAAGGGAAAGAAGAGGGATGAAGAAGAGTTGG
TAGTGATAGTAATATTATAAATAGAGTCTACTAAGTAATGTGTTAGAGGT
AAAAAACTTTTCACACGATCCAGACAGCTTAACGAGATTAATTATGCACG
AAAGTCTACTATATTTTAACAGTTTGTGTCAAATGTGGCCCAGAACATAA
GATGAATTCAGTACTGCTACCGAAAGAGTTATGATTAATGTTAAAAGGGA
TGTTACGAATAATAATAAAAAAGACTAACTAAATACCACGAATGGCAAAA
AAGGAGAGTGGAGACACAGCATGCGAGAAAGCACGACAAAACAAAATATG
CTGAATATAGCGTGACGAGATAAAAATGTAGAGAAATTACGTACTAAATT
CTAATCA
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